PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015008-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 259aa    MW: 29767 Da    PI: 10.159
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015008-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.3e-18192226135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++C+t kTp+WR gp g+ktLCnaCG++y++ +l
  NNU_015008-RA 192 CTHCRTEKTPQWRMGPKGPKTLCNACGVRYKSGRL 226
                    *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.7E-14186236IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.833186222IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-14189249No hitNo description
Gene3DG3DSA:3.30.50.101.9E-14190224IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.07E-13192240No hitNo description
PROSITE patternPS003440192217IPR000679Zinc finger, GATA-type
PfamPF003202.8E-16192226IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MTVTPSSYNT KLPSAIPLRF HSKLFPSVRG YVRRSRSFPH GFTGQLEDLE TDETESQLTL  60
GFDGFPAGFD CSLENFEGFS ESRLCVPGDP LDELEWFPSF TDDSISLNGF LPVPEPKNIF  120
PTTPEQKIEE NNRFSSRDDV GLLRNTIPSK KARSKRVCRR VWAQNVLPFS VPESRVPAKC  180
KHEKYYATRR NCTHCRTEKT PQWRMGPKGP KTLCNACGVR YKSGRLLPEY RPAASPSFNN  240
MMYSNSHKKI MKMRRMRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247258KKIMKMRRMRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269118.10.0PREDICTED: GATA transcription factor 7-like
TrEMBLA0A1U8ARX60.0A0A1U8ARX6_NELNU; GATA transcription factor 7-like
STRINGXP_010269118.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.17e-35GATA transcription factor 7