PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_015064-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Protein Properties

Length: 1014aa MW: 111614 Da PI: 8.2979

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_015064-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.7	1.1e-18	390	490	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++l NNU_015064-RA 390 FEKMLSASDAGRIGRLVLPKKCAEAYfpTISQPEGLPLQVQDARGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRID-PEGKL 483 89************************555567778***********99899999999.*******************987.77778 PP EEEEE-S CS B3 93 vvkvfrk 99 v++++++ NNU_015064-RA 484 VMGFRKA 490 8777765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.9E-30	387	493	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.94E-20	387	489	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.19E-22	388	489	No hit	No description
Pfam	PF02362	5.5E-16	390	489	IPR003340	B3 DNA binding domain
SMART	SM01019	2.0E-21	390	491	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.392	390	491	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.802	619	669	IPR011124	Zinc finger, CW-type
Pfam	PF07496	5.7E-11	624	666	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1014 aa Download sequence Send to blast
MSSSSSAAAS AVQKICFNPD CKDAKSERLR KGWRLRNGDY AELCDRCASA FEEGRFCETF 60 HSEAAGWRSC EICGKRVHCG CIASFHAFLL LDVGGIECIA CARKNVIPPS NPIWPPSFFL 120 PLPLPERLKD VNMKNWSQIA GPSAVAGQWR QTPNIWNTAA AQPELQSRMP YEVERSGAVS 180 AMDKKAEDPS ERLASNSLKL AAPDRLANGK AGTETLATLN KFRREEGNLD GLHHSYCYIG 240 ENDPADARKG AFAESGLNTT AINFETPPGS SVNVSLPSSI SKDEPSTLHF GFGVPYASPN 300 DTNGATRVSG TQSQRQTPPP SAKQVYATPN NGPDSSGETQ LRNGRPRGDA RGRNQLLPRY 360 WPRITDQELQ QISGEYPLIS FTNSVITPLF EKMLSASDAG RIGRLVLPKK CAEAYFPTIS 420 QPEGLPLQVQ DARGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRIDPE 480 GKLVMGFRKA SSVPPSDQEN QTPKSGSGVS ANGEVNSADP ASTWSKVDKS GYIAKDVPGA 540 KSSLPSKRKS STLGSKSKRL RIENEDLIEL KLTWEEAQGL LCPPPNHAPS IVVIEGHEFE 600 EYEEAPVLGK PTILTTNNQG EKVQWAQCED CSKWRKLPFD VLLPSRWTCS KNLWDPKRSS 660 CTSAQELSIE QLEDMISSAK ISTSKRTKAA KQVKDTVEAS DGLDTLANLA IMGEGEALPP 720 SAQPTTKHPR HRPGCTCIVC IQPPSGKGPK HKQTCTCNVC LTVKRRFRTL MLRREKRQSE 780 KEAETARKKQ QQLQMPEKTT DQEDDPPIGN ASNGSPNQKI AVNEIADEDP NRKKPSSSPL 840 KGQIDLNIQP EREDEPSPVS DSGSMLKMIR DATEMYLRKQ RLPSSANRDL VVNQLEPGGS 900 STGGEKLDCV QHGIASCLKK PTVIRLYIMG GGRLRMSEHL IPPFDRDGWM ELLLNLNNKH 960 AGYGFSLKDG KGETFLMAAA YKDEPRSASA VFSEAFAFYW LWEGATRSLR IKNI

Sequence ? help Back to Top

Protein Sequence Length: 1014 aa Download sequence Send to blast

MSSSSSAAAS AVQKICFNPD CKDAKSERLR KGWRLRNGDY AELCDRCASA FEEGRFCETF  60
HSEAAGWRSC EICGKRVHCG CIASFHAFLL LDVGGIECIA CARKNVIPPS NPIWPPSFFL  120
PLPLPERLKD VNMKNWSQIA GPSAVAGQWR QTPNIWNTAA AQPELQSRMP YEVERSGAVS  180
AMDKKAEDPS ERLASNSLKL AAPDRLANGK AGTETLATLN KFRREEGNLD GLHHSYCYIG  240
ENDPADARKG AFAESGLNTT AINFETPPGS SVNVSLPSSI SKDEPSTLHF GFGVPYASPN  300
DTNGATRVSG TQSQRQTPPP SAKQVYATPN NGPDSSGETQ LRNGRPRGDA RGRNQLLPRY  360
WPRITDQELQ QISGEYPLIS FTNSVITPLF EKMLSASDAG RIGRLVLPKK CAEAYFPTIS  420
QPEGLPLQVQ DARGKEWVFQ FRFWPNNNSR MYVLEGVTPC IQSMQLQAGD TVTFSRIDPE  480
GKLVMGFRKA SSVPPSDQEN QTPKSGSGVS ANGEVNSADP ASTWSKVDKS GYIAKDVPGA  540
KSSLPSKRKS STLGSKSKRL RIENEDLIEL KLTWEEAQGL LCPPPNHAPS IVVIEGHEFE  600
EYEEAPVLGK PTILTTNNQG EKVQWAQCED CSKWRKLPFD VLLPSRWTCS KNLWDPKRSS  660
CTSAQELSIE QLEDMISSAK ISTSKRTKAA KQVKDTVEAS DGLDTLANLA IMGEGEALPP  720
SAQPTTKHPR HRPGCTCIVC IQPPSGKGPK HKQTCTCNVC LTVKRRFRTL MLRREKRQSE  780
KEAETARKKQ QQLQMPEKTT DQEDDPPIGN ASNGSPNQKI AVNEIADEDP NRKKPSSSPL  840
KGQIDLNIQP EREDEPSPVS DSGSMLKMIR DATEMYLRKQ RLPSSANRDL VVNQLEPGGS  900
STGGEKLDCV QHGIASCLKK PTVIRLYIMG GGRLRMSEHL IPPFDRDGWM ELLLNLNNKH  960
AGYGFSLKDG KGETFLMAAA YKDEPRSASA VFSEAFAFYW LWEGATRSLR IKNI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	1e-61	362	492	2	126	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	763	776	KRRFRTLMLRREKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010268825.1	0.0	PREDICTED: B3 domain-containing protein Os07g0563300-like
Swissprot	Q0D5G4	0.0	Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBL	A0A1U8B023	0.0	A0A1U8B023_NELNU; B3 domain-containing protein Os07g0563300-like
STRING	XP_010268825.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	1e-168	HSI2-like 1