PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015221-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 424aa    MW: 46292.8 Da    PI: 7.9032
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015221-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.6e-21215265256
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  NNU_015221-RA 215 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 265
                    59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.36E-34214274No hitNo description
SMARTSM003802.3E-38215278IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-32215273IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-23215273IPR016177DNA-binding domain
PROSITE profilePS5103223.235215272IPR001471AP2/ERF domain
PfamPF008472.3E-14216265IPR001471AP2/ERF domain
PRINTSPR003674.6E-11216227IPR001471AP2/ERF domain
PRINTSPR003674.6E-11238254IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MNSRERKPRL DGYIKAVGDG GCCKRFSLLH LEGMAAAIDI YSSSSPVVSD PFREELMKAL  60
EPFIKGASPA SSATPSTSSP SSSLPSTSSS SYPLSYFPSS IPSQPNPIPN FCSTSTTHMF  120
SQGFSSHDQL GLDRSGSIGL NYLSPSQIQQ IQAQIQFQQQ LAAMAAMAAA PVVQNQNNPG  180
QWQQKQQQQH TLNFLSPKAI PMKQVAGSVP KATKLYRGVR QRHWGKWVAE IRLPKNRTRL  240
WLGTFDTAEE AALAYDKAAY KLRGEFARLN FPNLRHQGAH VAGEFGDYKP LQSSVDAKLQ  300
AICQSLAISQ KQGNLSKPVF LAGKKKTTMD GQPQADSTVS PAQPLQTLVL EKSSQGESGF  360
LPSENCKVEN SSSPSSTDSD ESAGSSPDPD FKLPDFTEPP WDESENLSLQ RYPSWDIDWE  420
SILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-21214272160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269215.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4
TrEMBLA0A1U8AN090.0A0A1U8AN09_NELNU; ethylene-responsive transcription factor RAP2-4
STRINGXP_010269215.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.15e-56related to AP2 4