PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015270-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 475aa    MW: 51950.8 Da    PI: 5.6874
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015270-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.41.5e-07250272123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +Cgk F+r  nL+ H+r H
  NNU_015270-RA 250 HICDICGKGFKRDANLRMHMRAH 272
                    68*******************99 PP
2zf-C2H211.60.00083366382521
                    TTTEEESSHHHHHHHHH CS
        zf-C2H2   5 dCgksFsrksnLkrHir 21 
                     Cg+sFsrk+ L  H+ 
  NNU_015270-RA 366 TCGTSFSRKDKLFGHMA 382
                    6**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.81E-6247273No hitNo description
Gene3DG3DSA:3.30.160.602.1E-6250272IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003558.2E-4250272IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.905250277IPR007087Zinc finger, C2H2
PfamPF139127.4E-5250272IPR007087Zinc finger, C2H2
PROSITE patternPS000280252272IPR007087Zinc finger, C2H2
SMARTSM0035548297330IPR015880Zinc finger, C2H2-like
SMARTSM0035513335357IPR015880Zinc finger, C2H2-like
SMARTSM00355230363387IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MLDSDRYFLH SPGGCSAGGH EIAAAEANLS CVSTGHGVGF QMIPFSSGDP RIPLFNLSLL  60
RQKMDSLQEF LSDSVKRNTF IGKNKMDMVS TEISSAIQHV IVNGAALLAC YQHQPPDHNL  120
ASSQVLEPSG VRPMAGRVPF QPDPLAPGSS LATSSKASDS SYLIAGKVHP KTQPITVETM  180
KGSRSNLTPG TLPTNPDLET PMTISLGSEE MTSTKFSPAI SDEGIKTEID DEGGEIVEID  240
AVELLAEHIH ICDICGKGFK RDANLRMHMR AHGDQFKTPE ALAKPDRLAG VKRKIRFSCP  300
FVGCNRNKSH KKFRPLKSAI CVKNHFKRSH CPKMYSCNRC NKKSFSVVAD LKSHLKHCGE  360
PKWRCTCGTS FSRKDKLFGH MALFEGHMPA VVAEAYEESK EAVVMDDDED LEDAEEEGEE  420
YEETQLREGD AAASCSGYDL FEDLLDGFVP TDDDSFKDVL GSPSLVAGMD DIFQI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269286.10.0PREDICTED: zinc finger protein STOP1 homolog
TrEMBLA0A1U8B0E50.0A0A1U8B0E5_NELNU; zinc finger protein STOP1 homolog
STRINGXP_010269286.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.22e-73C2H2 family protein