PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_015310-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

SRS

Protein Properties

Length: 349aa MW: 35996.8 Da PI: 8.4299

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_015310-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	218	2e-67	133	292	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 s++a+CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWvpaa+rrer+ +aaa++ a +s +++a k++r +++++++s+t++s++++++ NNU_015310-RA 133 STAATCQDCGNQAKKDCNHRRCRTCCKSRGFDCPTHVKSTWVPAARRRERHLSAAAAAAAAGSSGSTSAVKKPRLI-ASQTTTASHTSTSNTTPPR 227 56789*******************************************99999999999998899999999986.7888999999***** PP DUF702 99 eletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++tss lP +++++avf+cvrv++vddge e+aYq++v+igGhvfkG+LydqG++ NNU_015310-RA 228 SFDTSSshqdasfretLPGQIRAPAVFKCVRVTAVDDGEGEYAYQAVVKIGGHVFKGFLYDQGVD 292 999******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.6E-62	136	292	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.2E-27	137	179	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.0E-30	244	291	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MGMVGLRDVF VVAPASSFHH NQQHEPILSD HHHQINNSNA ATALGVGVGV GVIPLLTASC 60 LGPANVGIDD GDNMNSRSRG GGIHLWQNQQ PQNYLKKPML IDHNNSANLL SSSNNGACGG 120 TGSGGLGMTS TTSTAATCQD CGNQAKKDCN HRRCRTCCKS RGFDCPTHVK STWVPAARRR 180 ERHLSAAAAA AAAGSSGSTS AVKKPRLIAS QTTTASHTST SNTTPPRSFD TSSSHQDASF 240 RETLPGQIRA PAVFKCVRVT AVDDGEGEYA YQAVVKIGGH VFKGFLYDQG VDGRDGFPNI 300 SDLHLGGGSG GGGTRNGASS SSPILDPSDV YAASGGGLLG GTAYGNPIN

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MGMVGLRDVF VVAPASSFHH NQQHEPILSD HHHQINNSNA ATALGVGVGV GVIPLLTASC  60
LGPANVGIDD GDNMNSRSRG GGIHLWQNQQ PQNYLKKPML IDHNNSANLL SSSNNGACGG  120
TGSGGLGMTS TTSTAATCQD CGNQAKKDCN HRRCRTCCKS RGFDCPTHVK STWVPAARRR  180
ERHLSAAAAA AAAGSSGSTS AVKKPRLIAS QTTTASHTST SNTTPPRSFD TSSSHQDASF  240
RETLPGQIRA PAVFKCVRVT AVDDGEGEYA YQAVVKIGGH VFKGFLYDQG VDGRDGFPNI  300
SDLHLGGGSG GGGTRNGASS SSPILDPSDV YAASGGGLLG GTAYGNPIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019054766.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	6e-92	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A1U8Q9M6	0.0	A0A1U8Q9M6_NELNU; protein LATERAL ROOT PRIMORDIUM 1-like
STRING	XP_010269431.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	6e-74	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]