PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_015314-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WRKY

Protein Properties

Length: 87aa MW: 9176.55 Da PI: 7.6088

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_015314-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	34.2	5.2e-11	4	33	30	59
TT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 30 agCpvkkkversaedpkvveitYegeHnhe 59 +gCpvkk+v+r ed +++++tYeg+H+h+ NNU_015314-RA 4 PGCPVKKQVQRFLEDMSILITTYEGTHKHP 33 69***************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	12.45	1	35	IPR003657	WRKY domain
SMART	SM00774	7.4E-4	2	34	IPR003657	WRKY domain
Pfam	PF03106	6.7E-8	4	33	IPR003657	WRKY domain
SuperFamily	SSF118290	1.01E-8	4	35	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	3.6E-10	4	35	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 87 aa Download sequence Send to blast
MVAPGCPVKK QVQRFLEDMS ILITTYEGTH KHPLPLGETT GASTTSGAAN FMLPSGSSGA 60 AIPGGIFNDA RIPIPYQNPH LISPLPY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by potassium deprivation. {ECO:0000269\|PubMed:15173595}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246360.1	1e-47	PREDICTED: probable WRKY transcription factor 9
Swissprot	Q9C9F0	1e-19	WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBL	A0A1U7ZFQ4	3e-46	A0A1U7ZFQ4_NELNU; probable WRKY transcription factor 9
STRING	XP_010246360.1	5e-47	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	7e-19	WRKY DNA-binding protein 9