PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_015342-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 271aa MW: 28872.3 Da PI: 7.5245

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_015342-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.4	6.9e-10	131	157	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC+ + + C++Gd+C+FaHg+ NNU_015342-RA 131 YKTKLCNKYNTSEGCRFGDKCHFAHGE 157 9************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	65	68	93	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.07	68	94	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.5E-4	78	91	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.66E-9	128	161	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.1E-15	129	161	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.821	130	158	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-4	130	157	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.3E-7	131	157	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MEVGISNVGG SIRPKVAHLD QHADSVTSQL HSFSFGLEKG FKDEKVAGVR WPRCGAAEPF 60 FWRKTKTLYE VLQCQGSTSG CPFGESCHFL HYVPGGLSSL GLAPVLSLSA AASQRKSSGP 120 VGDPSVTVSG YKTKLCNKYN TSEGCRFGDK CHFAHGESDL HLPNNMSRGN VQRAPAEGPR 180 GLGPPGFNNS VSNFPNPTTY MNISNFNSQG YGEPNAPGVP TASYEAGPVG ENVQFPLGYH 240 LTRELLTSNL VGAQMGDPKL ASSELLPDCV H

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010269423.1	1e-109	PREDICTED: zinc finger CCCH domain-containing protein 31-like
TrEMBL	A0A1U8APA5	1e-108	A0A1U8APA5_NELNU; zinc finger CCCH domain-containing protein 31-like
STRING	XP_010269423.1	1e-109	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	3e-09	C3H family protein