PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015476-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 315aa    MW: 34627.5 Da    PI: 6.165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015476-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.6e-1964112355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  NNU_015476-RA  64 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 112
                    9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.77563120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-3263121IPR001471AP2/ERF domain
SMARTSM003803.1E-3863126IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2263121IPR016177DNA-binding domain
PfamPF008474.7E-1264112IPR001471AP2/ERF domain
PRINTSPR003678.3E-126475IPR001471AP2/ERF domain
CDDcd000183.56E-3264121No hitNo description
PRINTSPR003678.3E-1286102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MCGGAIIADF IPRNRNRRVT ARDLWPNSPF AKTDDDFESD FRRFNAGDGA AGENNGKRKR  60
KNLYRGIRQR PWGKWAAEIR DPRKGVRVWL GTFNTAEEAA RAYDREARKI RGKKAKVNFP  120
NEDDEYSAPN AQVPSHRNPQ PLYNQTYCGG IPKNTDFGFP AHLNQAFPAN GYYGGVPPVN  180
PNPIVFLPHG DMSSSASGSE GAASSPSMMG SDQDGGDACF QQVNMKVKGE GLLEPKRESN  240
KGILIEDDEV QKLSEELMAF ESYMKFYHIP FDGGVEQPTT APNPAQENIA GGVSLDLWSF  300
DDVPAASAAM VSTAM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-21641221574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269613.10.0PREDICTED: ethylene-responsive transcription factor RAP2-2-like
TrEMBLA0A1U8APS70.0A0A1U8APS7_NELNU; ethylene-responsive transcription factor RAP2-2-like
STRINGXP_010269613.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-33ethylene-responsive element binding protein