PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015548-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MIKC_MADS
Protein Properties Length: 241aa    MW: 27265.3 Da    PI: 8.5866
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015548-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.44.4e-29959151
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   krien + rqvtfskRr+g+lKKA+ELS+LCdaeva+iifss+gkl+e++s
  NNU_015548-RA  9 KRIENATSRQVTFSKRRAGLLKKAQELSILCDAEVALIIFSSSGKLFEFAS 59
                   79***********************************************86 PP
2K-box60.75.7e-21831601188
          K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                     + +++ ++e++ Lk+ei  L+  +R+++G++L+ LslkeLq+Le qL +++ +++++K++llleq+e+++ + +el+
  NNU_015548-RA  83 YEVEKQQSKEVNILKDEIARLRMANRRMMGKELTGLSLKELQHLEYQLSEGILSVKDRKEQLLLEQLEQSRLQVEELR 160
                    455677899**************************************************************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-43160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.347161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-33277IPR002100Transcription factor, MADS-box
CDDcd002657.60E-44272No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-31323IPR002100Transcription factor, MADS-box
PfamPF003194.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004048.1E-313859IPR002100Transcription factor, MADS-box
PfamPF014867.4E-1586159IPR002487Transcription factor, K-box
PROSITE profilePS5129711.18586169IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010047Biological Processfruit dehiscence
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0060862Biological Processnegative regulation of floral organ abscission
GO:0060867Biological Processfruit abscission
GO:0071365Biological Processcellular response to auxin stimulus
GO:2000692Biological Processnegative regulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRGKIEIKR IENATSRQVT FSKRRAGLLK KAQELSILCD AEVALIIFSS SGKLFEFASS  60
SMKRTLSRYN KCLDCSETAI VEYEVEKQQS KEVNILKDEI ARLRMANRRM MGKELTGLSL  120
KELQHLEYQL SEGILSVKDR KEQLLLEQLE QSRLQVEELR GLLPSTERPI PPYLELQPME  180
NKHSHIKQDI ISSNIGCNCL FEKQGDSDTS LHLGLPSDSC RKRKAPEASV SNGSRTEIAP  240
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-23169169MEF2 CHIMERA
6byy_B3e-23169169MEF2 CHIMERA
6byy_C3e-23169169MEF2 CHIMERA
6byy_D3e-23169169MEF2 CHIMERA
6bz1_A3e-23169169MEF2 CHIMERA
6bz1_B3e-23169169MEF2 CHIMERA
6bz1_C3e-23169169MEF2 CHIMERA
6bz1_D3e-23169169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00508DAPTransfer from AT5G13790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269745.11e-163PREDICTED: agamous-like MADS-box protein AGL15
SwissprotQ392951e-64AGL15_BRANA; Agamous-like MADS-box protein AGL15
TrEMBLA0A1U8B1F11e-162A0A1U8B1F1_NELNU; agamous-like MADS-box protein AGL15
STRINGXP_010269745.11e-163(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.16e-53AGAMOUS-like 15