PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015568-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 191aa    MW: 21842.8 Da    PI: 9.9084
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015568-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.82e-34271182102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl k+y ++e+++++++isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv  ++         weF ++ F++g++ell++i
  NNU_015568-RA  27 FLLKTYMLVENPATDDIISWNAEGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVVASR---------WEFYNDLFRRGQRELLSEI 113
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  NNU_015568-RA 114 RRRKA 118
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.53E-3422116IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.8E-3723116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.1E-5423116IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-182750IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-186577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.9E-187890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSQAKTVEHG FDKGLLEYVG KSSPPPFLLK TYMLVENPAT DDIISWNAEG TAFVVWQPAE  60
FARDLLPTLF KHSNFSSFVR QLNTYGFRKV VASRWEFYND LFRRGQRELL SEIRRRKAWR  120
SKVHPVAPPV QAAVQESDEE RGSTSTSSSS GHGSLFDENK RLKRENDMLN SELVSVKKRC  180
KELLDMVARG T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-242011613120Heat shock factor protein 1
5d5u_B3e-242011622129Heat shock factor protein 1
5d5v_B3e-242011622129Heat shock factor protein 1
5d5v_D3e-242011622129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269762.11e-141PREDICTED: heat stress transcription factor B-3-like
SwissprotO222303e-68HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1U8AQ461e-139A0A1U8AQ46_NELNU; heat stress transcription factor B-3-like
STRINGXP_010269762.11e-140(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.13e-63heat shock transcription factor B3