PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_015625-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 698aa MW: 81418 Da PI: 6.4567

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_015625-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.7	1.4e-26	72	157	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY+eYA+++GF+++k+++++s+ +g++++++f C ++g+ +++ ++ ++r+++rt+Cka+++vk+++dgkw+v+++++eHnHel p NNU_015625-RA 72 FYEEYARSLGFTIKKKNTRRSTLTGKFIDAHFACFRQGSYRQKGEA----VNSRPSHRTDCKASMHVKRRQDGKWVVHNFVKEHNHELLP 157 9************************************9998877....99*********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.8E-23	72	157	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.3E-29	278	371	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.285	558	594	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	0.001	566	590	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-4	569	596	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 698 aa Download sequence Send to blast
MEIDLEVNAD EHEMEDSRSN GFGNTMSEGE TQREDELALN FPSVDHAFAE EDENFEPCKG 60 MEFDSHEEAY LFYEEYARSL GFTIKKKNTR RSTLTGKFID AHFACFRQGS YRQKGEAVNS 120 RPSHRTDCKA SMHVKRRQDG KWVVHNFVKE HNHELLPARA FFFRRRRSMS LISKKILDIL 180 HIAQIQTSNV CAMMSSNQHS GYQSVDCPEE DIRNQMDREG RLAIESEDAR AMLDHFMHMQ 240 EENPNFFYVI DLNDEQRLRN VFWVDVKGRN DYFSYGDVVY FDTTYLAKKY KVPFVPLVGL 300 NHHFQPILFG CALLADKARP TFIWLMRTWL KVMGGVAPKV IITNQEKAVK AAVAEVFPNI 360 HHQFCLWHIL RSVTEKLGHV IERNKNFIEE FNNCVFRSWT EGEFENQWLK MIENFEIQED 420 DWIITLYEDR KHWVPAYIKD TSLVGMSSTH QSENISSFFD KYVYKNTPLK EFLVQYKVIQ 480 QDSHDEESKA DFDTWHGVPT LKTHSPYEKQ MSTIYTHEIF RKFQVEVSGI VACHPRKEKE 540 DGTKIIYTVL DYEAQKEYIV AWDETKSEVS CLCHLFEYKG FLCRHAMIVL QFSAVTEIPS 600 QYILKRWTKD ARSRHAIGQR SEEVDSRAKR CNDLCQRAIN LGIEASISQE SYDIAVQALE 660 EAIRKSTKVN NSIKYTTKPS ASAVHGGFGT EETMQRLG

Sequence ? help Back to Top

Protein Sequence Length: 698 aa Download sequence Send to blast

MEIDLEVNAD EHEMEDSRSN GFGNTMSEGE TQREDELALN FPSVDHAFAE EDENFEPCKG  60
MEFDSHEEAY LFYEEYARSL GFTIKKKNTR RSTLTGKFID AHFACFRQGS YRQKGEAVNS  120
RPSHRTDCKA SMHVKRRQDG KWVVHNFVKE HNHELLPARA FFFRRRRSMS LISKKILDIL  180
HIAQIQTSNV CAMMSSNQHS GYQSVDCPEE DIRNQMDREG RLAIESEDAR AMLDHFMHMQ  240
EENPNFFYVI DLNDEQRLRN VFWVDVKGRN DYFSYGDVVY FDTTYLAKKY KVPFVPLVGL  300
NHHFQPILFG CALLADKARP TFIWLMRTWL KVMGGVAPKV IITNQEKAVK AAVAEVFPNI  360
HHQFCLWHIL RSVTEKLGHV IERNKNFIEE FNNCVFRSWT EGEFENQWLK MIENFEIQED  420
DWIITLYEDR KHWVPAYIKD TSLVGMSSTH QSENISSFFD KYVYKNTPLK EFLVQYKVIQ  480
QDSHDEESKA DFDTWHGVPT LKTHSPYEKQ MSTIYTHEIF RKFQVEVSGI VACHPRKEKE  540
DGTKIIYTVL DYEAQKEYIV AWDETKSEVS CLCHLFEYKG FLCRHAMIVL QFSAVTEIPS  600
QYILKRWTKD ARSRHAIGQR SEEVDSRAKR CNDLCQRAIN LGIEASISQE SYDIAVQALE  660
EAIRKSTKVN NSIKYTTKPS ASAVHGGFGT EETMQRLG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010269883.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
Refseq	XP_010269884.1	0.0	PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A1U8ATV6	0.0	A0A1U8ATV6_NELNU; protein FAR-RED IMPAIRED RESPONSE 1-like
STRING	XP_010269883.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]