PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015679-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family LSD
Protein Properties Length: 144aa    MW: 15130.7 Da    PI: 7.9177
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015679-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.79.5e-142751125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   C+gCr+lL YP+GA+sV+Ca+C++V
  NNU_015679-RA 27 CSGCRNLLVYPIGATSVCCAVCNAV 51
                   ************************9 PP
2zf-LSD146.55.8e-156690125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   CggC+tlL+Y rGA+sV+C++C+t+
  NNU_015679-RA 66 CGGCHTLLMYIRGATSVQCSCCHTI 90
                   ***********************97 PP
3zf-LSD141.91.7e-13104128125
        zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                    Cg+Cr lL+Y +GA+sV+Ca+C++V
  NNU_015679-RA 104 CGNCRMLLMYQYGARSVKCAVCNFV 128
                    ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.104.8E-422125No hitNo description
TIGRFAMsTIGR010536.3E-132454IPR005735Zinc finger, LSD1-type
SuperFamilySSF486952.65E-527125IPR011031Multihaem cytochrome
PfamPF069435.3E-112751IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.1E-146392IPR005735Zinc finger, LSD1-type
PfamPF069439.6E-136690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.6E-12101130IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-12104128IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MPVPLAPYPT APVPFTPPNG TQSQLVCSGC RNLLVYPIGA TSVCCAVCNA VTVVPPPGTE  60
MAQLVCGGCH TLLMYIRGAT SVQCSCCHTI NLALEANQVA HVNCGNCRML LMYQYGARSV  120
KCAVCNFVTS IGASPSTTEQ KFNN
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269986.11e-100PREDICTED: protein LSD1
RefseqXP_010269987.11e-100PREDICTED: protein LSD1
RefseqXP_010269988.11e-100PREDICTED: protein LSD1
SwissprotQ93ZB11e-79LOL1_ARATH; Protein LOL1
TrEMBLA0A1U8AU497e-99A0A1U8AU49_NELNU; protein LSD1
STRINGXP_010269986.11e-99(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-65lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]