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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_015689-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 232aa MW: 25896.8 Da PI: 7.3027 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 14.4 | 0.00011 | 60 | 82 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y+C+ C + F++ L H+++H
NNU_015689-RA 60 YTCTFCRREFRSAQALGGHMNVH 82
9********************99 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 2.59E-6 | 57 | 86 | No hit | No description |
| Pfam | PF13912 | 1.7E-5 | 60 | 83 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 11.157 | 60 | 87 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0066 | 60 | 82 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 62 | 82 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 232 aa Download sequence Send to blast |
MIQLQKLAQS QQQQPNPSLA AGSWMWNAKQ AQDDDDSWEV RAFAEDTGNI LGTTWPPRSY 60 TCTFCRREFR SAQALGGHMN VHRRDRARLR QSPPASADPS SSSNSSSTFL IPTPEFAPNG 120 AYCLLYPLPS PTNSFTPTSL NRCMDSPPTL LSLPNYSTNT LVPSCPPSIN FPASTDIQAS 180 SCHSANKLEP SFSVDDSYNY NYNKELPVEE LDLELRLGQR PPSLRRSVRR WP |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1njq_A | 3e-13 | 55 | 82 | 2 | 29 | superman protein |
| 2l1o_A | 3e-13 | 55 | 82 | 2 | 29 | Transcriptional regulator SUPERMAN |
| Search in ModeBase | ||||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010269999.1 | 1e-164 | PREDICTED: transcriptional regulator SUPERMAN-like | ||||
| TrEMBL | A0A1U8AU58 | 1e-162 | A0A1U8AU58_NELNU; transcriptional regulator SUPERMAN-like | ||||
| STRING | XP_010269999.1 | 1e-163 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G17810.1 | 9e-38 | C2H2 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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