PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015710-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 450aa    MW: 49177.3 Da    PI: 8.3594
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015710-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.3e-115378126
                   --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                   ++++ C +++rtG C yG++C+F+H+
  NNU_015710-RA 53 PGEPDCIYYLRTGLCGYGSNCRFNHP 78
                   5789*********************8 PP
2zf-CCCH36.58e-1297121327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    ++ C++f++tGtCk+G++Ck++H++
  NNU_015710-RA  97 QPDCQYFLKTGTCKFGATCKYHHPR 121
                    789********************96 PP
3zf-CCCH33.76.4e-11144166527
                    --SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     C++++rtG Ck+G  CkF+H++
  NNU_015710-RA 144 SCPYYMRTGSCKFGMACKFHHPQ 166
                    6********************97 PP
4zf-CCCH38.52e-12292317227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++C+++++tG Ck+G++Ck++H++
  NNU_015710-RA 292 DQPECQYYMKTGSCKFGPTCKYHHPK 317
                    689*********************96 PP
5zf-CCCH309e-10338362226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    +++ C f+  +G+CkyG++Ck+ H+
  NNU_015710-RA 338 GQAVCTFYTLYGICKYGPTCKYDHP 362
                    7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.2635280IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-55279IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-95478IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.5E-65779IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-45877IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.48894122IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-694121IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-997121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-698124IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-4100121IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6138167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061139167IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-4141166IPR000571Zinc finger, CCCH-type
PfamPF006429.8E-9143166IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4144165IPR000571Zinc finger, CCCH-type
SMARTSM003569.2E-6290317IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.079290318IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10292317IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6293319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-5296317IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-7336363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.648336364IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-7338362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5339364IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MPDNWQAQNN GVSTSFNNAS ADNLEDSMWR LKIQPHDNQE GVAANSSPYP DRPGEPDCIY  60
YLRTGLCGYG SNCRFNHPAY AGRAVQYRGE LPERVGQPDC QYFLKTGTCK FGATCKYHHP  120
RDRHDTAHVL LNILGLPMRQ EEKSCPYYMR TGSCKFGMAC KFHHPQPATL GLVSPITGPT  180
AYGSTGSSVA PPSGVPYISG IPAWSLPRAP YISSPRMQGP QAYMPVVLSP SQGIIPAQQG  240
WNTYTGTLSP ISSTSVLGSN IAYNSKPQGE SGSSGQVQLL STSVPHFPER PDQPECQYYM  300
KTGSCKFGPT CKYHHPKERI APLATSTLGP LGLPLRPGQA VCTFYTLYGI CKYGPTCKYD  360
HPLGAYFSYS MSLPALSMPD PTLFPYQRNS PMARSAETSP SKSSRLPDRK PEVSTTKHQN  420
PDTKPPESPP QQATPTQTSP TSELPHDQSD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270053.10.0PREDICTED: zinc finger CCCH domain-containing protein 12 isoform X1
SwissprotQ9SWF91e-114ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A1U8B2550.0A0A1U8B255_NELNU; zinc finger CCCH domain-containing protein 12 isoform X1
STRINGXP_010270053.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-105C3H family protein