PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015800-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 172aa    MW: 18756.5 Da    PI: 6.5073
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015800-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.53.1e-193412159
                   -EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY 21 prsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                   +rsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  NNU_015800-RA  3 SRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 41
                   7*************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007744.5E-12142IPR003657WRKY domain
PROSITE profilePS5081123.192143IPR003657WRKY domain
PfamPF031064.3E-14341IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-18343IPR003657WRKY domain
SuperFamilySSF1182903.27E-15343IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MLSRSYYKCT NAGCPVRKHV ERASHDPKAV ITTYEGKHNH DVPAARTSAH DTTGNIDYST  60
ALNGMLSSRL EENDTVSLDL GVGINSSPEN RSNEKQQRLD AKPAQIETNV TALGCNKVIE  120
ATPVSYYAGI NDGVDRYGSR ENGGESFSFE TYPSSHSSNP YQQNTGRLLM GP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-184443878Probable WRKY transcription factor 4
2lex_A1e-184443878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPCU585402e-36U58540.1 Petroselinum crispum DNA-binding protein WRKY2 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270167.11e-118PREDICTED: probable WRKY transcription factor 20
SwissprotQ6VWJ62e-37WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A1U8AR491e-117A0A1U8AR49_NELNU; probable WRKY transcription factor 20
STRINGXP_010270167.11e-118(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.13e-39WRKY family protein