PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015801-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 583aa    MW: 64651.4 Da    PI: 5.1513
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015801-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4554.7e-1392125831374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lL++cA+ v++++l+ a++l+++l++l+s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s+e l+++++++ev+P++kf+++
  NNU_015801-RA 212 LKQLLIACAQTVADNNLTTADWLMTELRQLVSVSGEPIQRLGAYMLEGLVARLASSGSSIYKALRCKEPA---SAELLSYMHILYEVCPYFKFGYM 304
                    689******************************************************************9...9********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     aN aI ea++ge++vHiiDf+i qG QW++L+qaLa + p+gpp++RiTg+++++s   +   l  +g+rL+++Ae+++vpfef++ +a +  ++
  NNU_015801-RA 305 SANGAIAEALKGENKVHIIDFQIAQGSQWIPLIQALAaAHPGGPPHIRITGIDDATSAyaRGGGLDIVGQRLSRLAESCHVPFEFHA-AAMSGCEV 399
                    ************************************97788*************999899999************************.89999*** PP

           GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                    ele+L ++pgEalaVn++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n+++F+ rf+e+l+yy+a+f+s++  lpr+++eri+v
  NNU_015801-RA 400 ELEDLCIRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFVPRFIETLNYYTAMFESIDLALPRDDKERINV 495
                    ************************************************************************************************ PP

           GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    E+++l+r++vn++acegaer+erhe ++kWr+r+++aGF+++pls+++++ +k+ll+k++ + yr+ee++g+l+lgW++r+Lv+++aW+
  NNU_015801-RA 496 EQHCLARDVVNIIACEGAERVERHELFGKWRSRFTMAGFTSYPLSSSVNAAIKTLLEKYSPN-YRLEERDGALYLGWMNRSLVTTCAWK 583
                    ************************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.994186564IPR005202Transcription factor GRAS
PfamPF035141.6E-136212583IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MSSQLRAENV SSQKNYQYYS GFPVAGMSQL VGYSSMQASQ KYGNSNGSHR SYYQPVQEVE  60
SYCLSQGFQN LDQQCSKDSN QESNFHVQTS HEEYCTLDSS SATGSYTVYS SPSSLSFSPN  120
GSPISQQDSL SYPSDPHHSP DYAYGSPISS SCITDEVNDL RHKLRELETA MLGPDSYVVD  180
SFHETFDGGA DQTSLETDKL SQVLEMISRG DLKQLLIACA QTVADNNLTT ADWLMTELRQ  240
LVSVSGEPIQ RLGAYMLEGL VARLASSGSS IYKALRCKEP ASAELLSYMH ILYEVCPYFK  300
FGYMSANGAI AEALKGENKV HIIDFQIAQG SQWIPLIQAL AAAHPGGPPH IRITGIDDAT  360
SAYARGGGLD IVGQRLSRLA ESCHVPFEFH AAAMSGCEVE LEDLCIRPGE ALAVNFAFML  420
HHMPDESVST QNHRDRLLRL VKSLSPKVVT LVEQESNTNT APFVPRFIET LNYYTAMFES  480
IDLALPRDDK ERINVEQHCL ARDVVNIIAC EGAERVERHE LFGKWRSRFT MAGFTSYPLS  540
SSVNAAIKTL LEKYSPNYRL EERDGALYLG WMNRSLVTTC AWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6221958226378Protein SCARECROW
5b3h_A4e-6221958225377Protein SCARECROW
5b3h_D4e-6221958225377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270168.10.0PREDICTED: scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1U8B2G80.0A0A1U8B2G8_NELNU; scarecrow-like protein 21
STRINGXP_010270168.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]