PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015884-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 230aa    MW: 25805.1 Da    PI: 6.28
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015884-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.92.8e-18165200136
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 
                    C++C + kTp+WR gp g+ktLCnaCG++y++ +l+
  NNU_015884-RA 165 CTHCDAEKTPQWRMGPMGPKTLCNACGVRYKSGRLM 200
                    ********************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-17159209IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.123159195IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-14161222No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14162197IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.56E-12164212No hitNo description
PfamPF003208.2E-16165200IPR000679Zinc finger, GATA-type
PROSITE patternPS003440165190IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAVCESYNAA DLLDFKLDDL EENLREIDTP FQAGFDDFPA GFDNFPEIFE GFTGSQLCVP  60
EDDVENLDWF PNFTEDSISL SDVLTASENS SISPTTPERE TENGKSYSSV DVCGLLRQTI  120
PSKRPRTKRV GGRVWSGNVM RFSLPESQVP AKAKRGKYNI MGRRCTHCDA EKTPQWRMGP  180
MGPKTLCNAC GVRYKSGRLM PEYRPAASPS FNSLLHSNSH KKIMKMRKGE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270320.11e-173PREDICTED: GATA transcription factor 9-like
TrEMBLA0A1U8B2U51e-172A0A1U8B2U5_NELNU; GATA transcription factor 9-like
STRINGXP_010270320.11e-173(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.13e-43GATA transcription factor 7