PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015908-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 196aa    MW: 22137.9 Da    PI: 4.7939
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015908-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM126.42.4e-3981271128
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                    lppGfrF Ptdeelvv++L +k++  +++  +vi+++d+y ++Pw+L  k++++ +++wyfFs+r         +nr+ ++gyWk  g d+++++ 
  NNU_015908-RA   8 LPPGFRFYPTDEELVVHFLYRKAALLPCHP-DVIPDLDLYPYDPWELSgKALEGINNHWYFFSRR--------TPNRISANGYWKPLGVDEPIFTG 94 
                    79*************************999.99**************9667777888******98........4699999**************** PP

            NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    ++++vg+kk Lvfy g+ap+g kt+Wvm+eyrl
  NNU_015908-RA  95 ESKKVGMKKYLVFYLGEAPTGIKTNWVMQEYRL 127
                    *******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-485157IPR003441NAC domain
PROSITE profilePS5100547.5948158IPR003441NAC domain
PfamPF023655.8E-249127IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGDGNVNLPP GFRFYPTDEE LVVHFLYRKA ALLPCHPDVI PDLDLYPYDP WELSGKALEG  60
INNHWYFFSR RTPNRISANG YWKPLGVDEP IFTGESKKVG MKKYLVFYLG EAPTGIKTNW  120
VMQEYRLSDS GSSSRSSRKK GNSKMDSSRL VLCRVYERSG GSQGSFCDED GDGTELSCLD  180
EVFLSLDDLD EISLPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-47516317173NAC domain-containing protein 19
3swm_B7e-47516317173NAC domain-containing protein 19
3swm_C7e-47516317173NAC domain-containing protein 19
3swm_D7e-47516317173NAC domain-containing protein 19
3swp_A7e-47516317173NAC domain-containing protein 19
3swp_B7e-47516317173NAC domain-containing protein 19
3swp_C7e-47516317173NAC domain-containing protein 19
3swp_D7e-47516317173NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270354.11e-144PREDICTED: NAC domain-containing protein 104-like
SwissprotQ8GWK65e-77NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1U8B3S01e-142A0A1U8B3S0_NELNU; NAC domain-containing protein 104-like
STRINGXP_010270354.11e-143(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-76xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]