PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015933-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 536aa    MW: 59725.6 Da    PI: 4.6595
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015933-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.21.4e-1371675362374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    ++lL++cA  +s+g++e+a++++++l++++s +gdp qR+aay++e+Laar+a s+++lykal+++e +   ss++l+a+++++ev+P++kf+ ++
  NNU_015933-RA 167 KQLLFDCAASISEGNMEEASSMITELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKGLYKALKCKEPP---SSDRLSAMQVLFEVCPYFKFGVMA 259
                    589*****************************************************************9...9*********************** PP

           GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                    aN aI eav+ e+rvHiiDfdi+qG Q+++L+qaLa+R+++pp+++iT+v++pes       l  +g+rL+++Ae+lg+pfef++ +a++++d+++
  NNU_015933-RA 260 ANAAIAEAVKDESRVHIIDFDINQGSQYIPLIQALATRQGKPPHIKITAVDDPESIqrAVGGLMIIGQRLENLAEALGMPFEFQA-LASKIADVTP 354
                    ******************************************************99777889***********************.599******* PP

           GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                    ++L+++p+Ea++Vn+++qlh+++desvs+ ++rd++L++vksl+Pk+v+vveq+++ n+++F++rf+ea +yysa++dsl+a+lpres +r++vEr
  NNU_015933-RA 355 SMLNCQPNEAVIVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNANTAPFFTRFVEAYNYYSAVYDSLDATLPRESPDRMNVER 450
                    ************************************************************************************************ PP

           GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    ++l+r+ivn+vaceg+er+er e ++kWr+r+++ GF++ p+s++++++++ ll+++ ++ y+v+ee+g+l++gW+++ L++ SaWr
  NNU_015933-RA 451 QCLARDIVNIVACEGEERVERYEVAGKWRARMMMTGFTSCPMSTSVNETIQKLLKQYCDR-YSVKEEKGALLFGWEEKYLIVSSAWR 536
                    **********************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.669140517IPR005202Transcription factor GRAS
PfamPF035144.7E-135167536IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MEFLRPAKSA IPGAMFRPQG GSSYQLMTTS SSSVSTQNSF NSSFTSMRHP VAYQSHSLSE  60
YLDEQSPDNG TLDYDDDNEV RLKLQELERT LLNDNDADDY VFGMDQNMDI DCEWIESIKN  120
LVLPNSPKES SSSDSNISSS SSSKLTPETP TIPPVSTPHS SRILTPKQLL FDCAASISEG  180
NMEEASSMIT ELRQMVSIQG DPPQRIAAYM VEGLAARMAA SGKGLYKALK CKEPPSSDRL  240
SAMQVLFEVC PYFKFGVMAA NAAIAEAVKD ESRVHIIDFD INQGSQYIPL IQALATRQGK  300
PPHIKITAVD DPESIQRAVG GLMIIGQRLE NLAEALGMPF EFQALASKIA DVTPSMLNCQ  360
PNEAVIVNFA FQLHHMPDES VSTVNQRDQL LRMVKSLNPK LVTVVEQDMN ANTAPFFTRF  420
VEAYNYYSAV YDSLDATLPR ESPDRMNVER QCLARDIVNI VACEGEERVE RYEVAGKWRA  480
RMMMTGFTSC PMSTSVNETI QKLLKQYCDR YSVKEEKGAL LFGWEEKYLI VSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-7117353526378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270382.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_010270383.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_010270384.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A1U8ARN10.0A0A1U8ARN1_NELNU; scarecrow-like protein 1
STRINGXP_010270381.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]