PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015981-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WOX
Protein Properties Length: 280aa    MW: 31838.8 Da    PI: 5.8394
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015981-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2098158257
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    r+R+t+ + ql++Le+ F + n +ps+++++e++++l    +++e++V++WFqNrRa+ k+
  NNU_015981-RA  98 RQRWTPAPIQLQILERIFDQgNGTPSKQKIKEITSELaqhgQISETNVYNWFQNRRARSKR 158
                    89*****************99**************************************97 PP
2Wus_type_Homeobox98.55.1e-3297160265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ar+RWtP p Q++iLe+++++G  tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq
      NNU_015981-RA  97 ARQRWTPAPIQLQILERIFDQGNGTPSKQKIKEITSELAQHGQISETNVYNWFQNRRARSKRKQ 160
                        789***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-1792164IPR009057Homeodomain-like
PROSITE profilePS5007114.80394159IPR001356Homeobox domain
SMARTSM003893.3E-1396163IPR001356Homeobox domain
SuperFamilySSF466891.58E-1796163IPR009057Homeodomain-like
CDDcd000868.81E-1498160No hitNo description
PfamPF000462.7E-1898158IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGTIRNGGET KEEMKMMEWE KQEQQQQQQN GVMMYVKVMT DEQMELLRKQ ISIYATICEE  60
LVEMHKAITA QRDLAGMRLG NLYFDPLMTS SGHKITARQR WTPAPIQLQI LERIFDQGNG  120
TPSKQKIKEI TSELAQHGQI SETNVYNWFQ NRRARSKRKQ QVAVPNNAES EIEIEVESPD  180
EKKAKPEIIH LHENQAPSAE DMCYQSPGII SALHSVDPQH NKAESIFSSD NTSKSSVSLS  240
HLSFYESVLS NSGYDHLIGK MEGPGSFNPY RQGEGYDMIG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151159RRARSKRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270477.10.0PREDICTED: WUSCHEL-related homeobox 8-like
SwissprotQ5QMM39e-96WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBLA0A1U8ARF30.0A0A1U8ARF3_NELNU; WUSCHEL-related homeobox 8-like
STRINGXP_010270477.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.12e-85WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]