PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_016013-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

LBD

Protein Properties

Length: 157aa MW: 17846.6 Da PI: 8.5751

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016013-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.7	4.7e-39	6	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+C +dC+lapyfp+++p++fa+vhk+FGasn++k+l++lp ++r a++++ +eA r+rdPvyG+v++i++l+qq+ ++ ela+ NNU_016013-RA 6 RCAACKYLRRRCLHDCILAPYFPSTNPERFACVHKIFGASNITKMLQQLPVHQRAVAADCMSFEAGTRVRDPVYGCVAIISQLHQQIIITQRELAE 101 6**********************************************************************************************9 PP DUF260 97 lkee 100 ++ + NNU_016013-RA 102 TQGQ 105 9977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.868	5	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-38	6	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MAKSTRCAAC KYLRRRCLHD CILAPYFPST NPERFACVHK IFGASNITKM LQQLPVHQRA 60 VAADCMSFEA GTRVRDPVYG CVAIISQLHQ QIIITQRELA ETQGQIAFYG AQQVQDLKQK 120 TQSRIQYNET MCFNASQQDS LHLDQSMLDF YRAPGLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-36	7	117	12	122	LOB family transfactor Ramosa2.1
5ly0_B	1e-36	7	117	12	122	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270541.1	1e-107	PREDICTED: LOB domain-containing protein 12-like isoform X1
Refseq	XP_010270542.1	1e-107	PREDICTED: LOB domain-containing protein 24-like isoform X2
Swissprot	P59468	1e-42	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A1U8ARK5	1e-106	A0A1U8ARK5_NELNU; LOB domain-containing protein 12-like isoform X1
TrEMBL	A0A1U8AS08	1e-106	A0A1U8AS08_NELNU; LOB domain-containing protein 24-like isoform X2
STRING	XP_010270541.1	1e-106	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	5e-45	LOB domain-containing protein 24