PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_016042-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 228aa MW: 25364.2 Da PI: 4.8392

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016042-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	98.2	8.9e-31	83	175	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s ++s+r+g i++r+ vCs+eg+r+ ++ + ++++r+ra+tr+gCka+++vk+ ++gkw+v+k+ eHnHel+p NNU_016042-RA 83 FYNSYARRVGFSTRVSVYHRSRRDGAIICRQVVCSREGFRRCRDGDdteGRSSKRQRAVTRVGCKAMITVKRLDSGKWVVSKFFREHNHELVP 175 9***************************************99986656677889*********************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.2E-28	83	175	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MEFEPLNMPN EVIEFDVMAG GSGEDDDTAI AVDVVHPDDD DDDYNDDDLV SGRDLAATVD 60 SLDPVLEPYE GMEFESEESA RIFYNSYARR VGFSTRVSVY HRSRRDGAII CRQVVCSREG 120 FRRCRDGDDT EGRSSKRQRA VTRVGCKAMI TVKRLDSGKW VVSKFFREHN HELVPPDKVH 180 CLRSHRHVSG PARSLIDTLQ AAGIGPSGVM SVLIKESGGI NNLIAETT

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270590.1	1e-159	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Swissprot	Q9SZL8	4e-68	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A1U8ARP8	1e-158	A0A1U8ARP8_NELNU; protein FAR1-RELATED SEQUENCE 5-like
STRING	XP_010270590.1	1e-158	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-65	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]