PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016212-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 102aa    MW: 11780.3 Da    PI: 4.0052
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016212-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.41.6e-081154445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     W+ eE +l+  a ++   +   +W+ +a+++g g+++++++ +++
    NNU_016212-RA 11 WSWEENKLFEVALAMVDEEnpnRWEVVAAMVG-GKSAEEVRKHYF 54
                     **************999989999*********.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.1E-5759IPR001005SANT/Myb domain
SuperFamilySSF466893.14E-111164IPR009057Homeodomain-like
PfamPF002491.2E-71154IPR001005SANT/Myb domain
CDDcd001672.03E-61157No hitNo description
Gene3DG3DSA:1.10.10.601.8E-41159IPR009057Homeodomain-like
PROSITE profilePS500906.1561157IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MGDVSGVFFG WSWEENKLFE VALAMVDEEN PNRWEVVAAM VGGKSAEEVR KHYFILLKDL  60
ECIESGRFDH GFEDQLCLQV ECTQSICWTD EDQKMLLQLD TN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-16167167RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270991.11e-70PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN05e-21RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A1U8B5B52e-69A0A1U8B5B5_NELNU; protein RADIALIS-like 3
STRINGXP_010270991.14e-70(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-19RAD-like 6