PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016231-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 274aa    MW: 31547.3 Da    PI: 7.637
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016231-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047141165123
                    EEETTTTEEESSHHHHHHHHHH..T CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt..H 23 
                    + C  C+k ++  +++++H+++  H
  NNU_016231-RA 141 FYCDLCNKQYKLAMEFEVHLSSydH 165
                    78*****************987666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004432.3E-1464110IPR000467G-patch domain
PROSITE profilePS5017414.4766697IPR000467G-patch domain
PfamPF015854.1E-1667101IPR000467G-patch domain
SuperFamilySSF576674.09E-5139172No hitNo description
PfamPF121714.6E-5141168IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280143165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDNKWYDSRQ ETCTEDKRPH RREEAYEDSL AEDLGEDFRL PIDHRPTENI DLDNVEQASL  60
DTQLSSSNIG FRLLQKMGWK GKGLGKDEQG IVEPIKAGIR DPNFYYLVAS TACFVHMMKI  120
QVIAEREQKI QTEVKEIRKV FYCDLCNKQY KLAMEFEVHL SSYDHNHRKR FKEMKEMHGS  180
SSRDDRQKRE QLRQEREMAK FAQIADAHKQ QHQNDQAGAT PTTLRSATAL ADLNQRKTLK  240
FGFSSKTGSS KNSFGGAAKK AKVASVFSND SDED
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271048.10.0PREDICTED: G patch domain-containing protein 8-like
TrEMBLA0A1U8B5G50.0A0A1U8B5G5_NELNU; G patch domain-containing protein 8-like
STRINGXP_010271048.10.0(Nelumbo nucifera)