PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016235-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26769.8 Da    PI: 6.5129
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016235-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.22.1e-131253445
                   -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
         SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    + + r+vtf kR +g+ KK + LS+LC+++++ ii+s+ +k
  NNU_016235-RA 12 ADPRVRKVTFEKRMKGLTKKLSDLSTLCGVDACAIIYSPYNK 53
                   56678*********************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.311153IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-6323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-19395IPR002100Transcription factor, MADS-box
CDDcd002666.05E-251085No hitNo description
PfamPF003193.4E-161153IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004041.6E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MPRAKTQHML IADPRVRKVT FEKRMKGLTK KLSDLSTLCG VDACAIIYSP YNKQPDVWPS  60
LPEAQLLAAR FQSLPEMEKG KKMTNQEGFL RQRISKLQEQ LKRQEKENRE TEINHLMYQC  120
LAGSRSLGDV NNIVDLKDLE ALIGEKMNLI EERIGYLRRP SPPLMVIDEG GDDQAEIAVP  180
CSLGMSMPQP SFMEMEVINN NPSGNQFTGF CGNGMMLTCG ETTTWSNHHF DGAFWGN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11631RKVTFEKRMKGLTKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271052.11e-179PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A1U8ASU61e-178A0A1U8ASU6_NELNU; agamous-like MADS-box protein AGL80
STRINGXP_010271052.11e-179(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-44AGAMOUS-like 80