PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016238-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26859 Da    PI: 8.7069
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016238-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.43.8e-181152344
                   --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
         SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                   i n+s r +tf kR+ng++KK +ELS+LC++ ++ ii+s+ +
  NNU_016238-RA 11 IANESARRTTFKKRKNGLMKKVSELSTLCGVSACAIIYSPYD 52
                   89*************************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.549153IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-25160IPR002100Transcription factor, MADS-box
CDDcd002667.87E-32285No hitNo description
SuperFamilySSF554557.06E-25395IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-10323IPR002100Transcription factor, MADS-box
PfamPF003194.1E-191153IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MARKKVKLAL IANESARRTT FKKRKNGLMK KVSELSTLCG VSACAIIYSP YDKQPDVWPS  60
ASDAQRVLAR FKNLPEMEQS KKKMNQEVFL RQRISKLKEQ LKRQEKDNRK HEMTILMYQT  120
LAGKSLNDVL IGDLNDLAWL VDEKLKEIQE RIEQLRRTPP RFIAVEESRC GDDTDVQENN  180
KTALEFMAMD ALQAQTLPSC WFMEVMNPHE HIMGSGSGGD SIGVVPYDSD ATYCI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLALIANESARRTTFKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271057.11e-175PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-52AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A1U8AWQ31e-173A0A1U8AWQ3_NELNU; agamous-like MADS-box protein AGL80
STRINGXP_010271057.11e-174(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-55AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]