PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_016277-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 313aa MW: 35266.2 Da PI: 6.9128

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016277-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.8	1e-32	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+e+LGG++kAtPk +l+lm+v gLt++hvkSHLQ+YR+ NNU_016277-RA 19 PRLRWTPDLHHCFVHAIERLGGQDKATPKLVLQLMDVRGLTISHVKSHLQMYRS 72 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.4E-31	15	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.276	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-15	17	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.3E-24	19	73	IPR006447	Myb domain, plants
Pfam	PF00249	2.9E-8	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MGTCGRNGAV RQYIRSKVPR LRWTPDLHHC FVHAIERLGG QDKATPKLVL QLMDVRGLTI 60 SHVKSHLQMY RSMKSDLSRQ DMHSNQQRKH SFDRHDGCVD EENDGGFFSS SKPIQDSDSQ 120 FIYGPLPPKR ARIETTNSIS HNLHCNNQRI CETVVSPYYF HDYLQAMAEN GGIKEGFRWQ 180 AEAPSTSFSL PPHLYNLNAF GYSMEESQFF KMAQVNVEQL PSTRKRKMEN MDNSFQSHLT 240 QSVDKEHTEE EEAGDCTLSL SLSLRPSAQS NASSTSEISE AISSSKDCSG SSQQRHINLD 300 LSISLCGSSV ESV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-18	20	74	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	227	TRKRKM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270741.1	0.0	PREDICTED: putative Myb family transcription factor At1g14600
TrEMBL	A0A1U8ASG4	0.0	A0A1U8ASG4_NELNU; putative Myb family transcription factor At1g14600
STRING	XP_010270741.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	3e-33	G2-like family protein