PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_016299-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 538aa MW: 59049.5 Da PI: 7.1182

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016299-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.5	0.00055	435	467	18	55
HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ +L++++ + +K + a++L +A+ YIk Lq NNU_016299-RA 435 DKITTLQQIVSPF-----GKTDTASVLLEAIGYIKFLQ 467 7888999999887.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.54	417	466	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-9	432	482	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.9E-8	432	475	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.20E-4	435	471	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MYVITKGSIA YKFPTHQRKE KKPKIEHPSE HKVDLVGGGM AEEGSEGSVA TPTTTALNWW 60 ESHNNSLSSW NSTAPWPLTN PNSNSSCDED ISISTSFTNA SNHSGLSVDS SRQIVEPASS 120 GELMGEPTSE NHLWSQVLLS VGSNGELNSG QDVGENFLGG LSSKNISSEM FEPACDYLKK 180 MDGGWEYTNS TSFNNLEKQF SGFNGNLVEN ERLTNLSNLV SNWSIAPPDS QADRQITLPT 240 CNISLNSSLD QYSDPEFSQM KQNPSNPSLY VVAGNRNPSF MPCYGHNMKV ESQHQELDSS 300 RASFQRQLSN NGLGHQTGLN NSILGDNSRY YHGMTDTRLS NTRNLLSFSG CLSKPLLDFQ 360 ASKPSLKASN SLESKKQGHD SLSLAKGNGR GTAIANEGKK KRSEDTSDTN PKKPKHETPT 420 AASVKVQATK VKLGDKITTL QQIVSPFGKT DTASVLLEAI GYIKFLQEQV QLLSNPYMKS 480 NANKDPWGTL ERKDKGEAKL DLKSRGLCLV PISCTPQIYR ENTGSDYWTP TYRGCLYR

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MYVITKGSIA YKFPTHQRKE KKPKIEHPSE HKVDLVGGGM AEEGSEGSVA TPTTTALNWW  60
ESHNNSLSSW NSTAPWPLTN PNSNSSCDED ISISTSFTNA SNHSGLSVDS SRQIVEPASS  120
GELMGEPTSE NHLWSQVLLS VGSNGELNSG QDVGENFLGG LSSKNISSEM FEPACDYLKK  180
MDGGWEYTNS TSFNNLEKQF SGFNGNLVEN ERLTNLSNLV SNWSIAPPDS QADRQITLPT  240
CNISLNSSLD QYSDPEFSQM KQNPSNPSLY VVAGNRNPSF MPCYGHNMKV ESQHQELDSS  300
RASFQRQLSN NGLGHQTGLN NSILGDNSRY YHGMTDTRLS NTRNLLSFSG CLSKPLLDFQ  360
ASKPSLKASN SLESKKQGHD SLSLAKGNGR GTAIANEGKK KRSEDTSDTN PKKPKHETPT  420
AASVKVQATK VKLGDKITTL QQIVSPFGKT DTASVLLEAI GYIKFLQEQV QLLSNPYMKS  480
NANKDPWGTL ERKDKGEAKL DLKSRGLCLV PISCTPQIYR ENTGSDYWTP TYRGCLYR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270771.1	0.0	PREDICTED: transcription factor bHLH111
TrEMBL	A0A1U8AVZ5	0.0	A0A1U8AVZ5_NELNU; transcription factor bHLH111
STRING	XP_010270771.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31050.1	1e-69	bHLH family protein