PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_016338-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 473aa MW: 53305.4 Da PI: 8.6278

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016338-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.6e-06	103	125	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H NNU_016338-RA 103 YVCEICNQGFQRDQNLQMHRRRH 125 9*********************9 PP
2	zf-C2H2	16	3.5e-05	180	202	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ NNU_016338-RA 180 WVCEKCSKGYAVQSDYKAHLKTC 202 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.9E-5	102	125	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.69E-5	102	125	No hit	No description
PROSITE profile	PS50157	10.97	103	125	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0052	103	125	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	105	125	IPR007087	Zinc finger, C2H2
SMART	SM00355	210	144	174	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	5.0E-4	171	201	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.69E-5	175	200	No hit	No description
SMART	SM00355	60	180	207	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MLASNSSPSL PSSEAFTCLE NGNNNNKRKR RPAGTPGEIL RHMGCFSFPS ILIMVLIDRL 60 LQLMNWVFWV SVFDDSFAFM LRLDPDAEVV SLSPKTLLES DRYVCEICNQ GFQRDQNLQM 120 HRRRHKVPWK LLKRETPEVR KRVFVCPEPS CLHHDPCHAL GDLVGIKKHF RRKHSNHKQW 180 VCEKCSKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES FIEHQDACNA GRLRTELQTL 240 QSACLSRTTS SRSPSSDTNF STAPWPGLRM QKPTEPVFLC PERNNPSVIE QRHNLELQLL 300 PSSNPLSNTF DVSVSPNSDE NQATQLQLSI GSCDHGEKIE SHNGSSSKNA GRVSPRDKKA 360 IEEPALATSR LKEQAREQLR LAMAEKAFAE EARQQAKRQI ELAEQEFANA KRIRQQAQAE 420 LDKAQILKEH ATKQINSTIL QITCHACKQQ FQASTLVAPP DENSLGKETA TVG

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MLASNSSPSL PSSEAFTCLE NGNNNNKRKR RPAGTPGEIL RHMGCFSFPS ILIMVLIDRL  60
LQLMNWVFWV SVFDDSFAFM LRLDPDAEVV SLSPKTLLES DRYVCEICNQ GFQRDQNLQM  120
HRRRHKVPWK LLKRETPEVR KRVFVCPEPS CLHHDPCHAL GDLVGIKKHF RRKHSNHKQW  180
VCEKCSKGYA VQSDYKAHLK TCGTRGHSCD CGRVFSRVES FIEHQDACNA GRLRTELQTL  240
QSACLSRTTS SRSPSSDTNF STAPWPGLRM QKPTEPVFLC PERNNPSVIE QRHNLELQLL  300
PSSNPLSNTF DVSVSPNSDE NQATQLQLSI GSCDHGEKIE SHNGSSSKNA GRVSPRDKKA  360
IEEPALATSR LKEQAREQLR LAMAEKAFAE EARQQAKRQI ELAEQEFANA KRIRQQAQAE  420
LDKAQILKEH ATKQINSTIL QITCHACKQQ FQASTLVAPP DENSLGKETA TVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-18	178	230	5	57	Zinc finger protein JACKDAW
5b3h_F	2e-18	178	230	5	57	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269\|PubMed:21556057, ECO:0000269\|PubMed:24039602}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by auxin. {ECO:0000269\|PubMed:24039602}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010271104.1	0.0	PREDICTED: protein SHOOT GRAVITROPISM 5
Swissprot	Q9C9X7	1e-131	IDD14_ARATH; Protein indeterminate-domain 14
TrEMBL	A0A1U8ATC7	0.0	A0A1U8ATC7_NELNU; protein SHOOT GRAVITROPISM 5
STRING	XP_010271104.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-126	indeterminate(ID)-domain 14

Publications ? help Back to Top
Arendsee ZW,Li L,Wurtele ES Coming of age: orphan genes in plants. Trends Plant Sci., 2014. 19(11): p. 698-708 [PMID:25151064] Qu Y, et al. Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis. J. Exp. Bot., 2017. 68(17): p. 4851-4867 [PMID:28992128]