PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016346-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ZF-HD
Protein Properties Length: 188aa    MW: 20576.7 Da    PI: 8.3913
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016346-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer90.61.5e-28957556
    ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56
                    Y+eCl+NhAaslG++a+DGCgEf+++   ++t+ +l CaACgCHRnFHR+ 
  NNU_016346-RA  9 AYRECLRNHAASLGSYATDGCGEFTAD---NTTPGGLMCAACGCHRNFHRKV 57
                   7*************************8...6789****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.4E-24957IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-161056IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152323.4641057IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-231056IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.1E-28102173IPR009057Homeodomain-like
SuperFamilySSF466898.97E-17106171IPR009057Homeodomain-like
TIGRFAMsTIGR015651.7E-27113171IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEGDGPNDAY RECLRNHAAS LGSYATDGCG EFTADNTTPG GLMCAACGCH RNFHRKVILL  60
GGGGGRGGST PSNHIPSSTH NNRVRDSDVV ELIDYASNQP ATAVESHEDR SGKKRVRTKF  120
TTEQKEKMLA FAEKLGWRIQ RRDQEDEIER FCRTVGVSRQ VFKVWMHNHK NSSSSSSAST  180
GNASSLTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-231141761879ZF-HD homeobox family protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243781.11e-92PREDICTED: zinc-finger homeodomain protein 1-like
TrEMBLA0A1U7YZW63e-91A0A1U7YZW6_NELNU; zinc-finger homeodomain protein 1-like
STRINGXP_010271248.11e-137(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.13e-42zinc finger homeodomain 1