PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_016476-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 474aa MW: 52470.6 Da PI: 5.3489

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016476-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00079	124	145	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +Cp Cg+++++ ++ +Hi ++ NNU_016476-RA 124 ECPVCGQPYRSEEEVSTHIESC 145 6******************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	1.6E-5	24	74	No hit	No description
CDD	cd09212	5.82E-20	185	269	No hit	No description
SMART	SM00580	4.5E-15	187	254	IPR018997	PUB domain
SuperFamily	SSF143503	2.75E-18	187	266	IPR018997	PUB domain
Pfam	PF09409	2.4E-15	188	255	IPR018997	PUB domain
SuperFamily	SSF54236	4.65E-9	332	440	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	1.6E-5	345	409	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MDDVKDKFKG FMKKVNNQFS SSSSDKFKGQ GRVLGSSSSG PANPILTRPS QNGDLRQNLP 60 PSNIKQRPSI PNTNGNSDGR LKNEPTPQSI PSSDRIPANG FDPFDSLITS GKRSQNGYSL 120 NVVECPVCGQ PYRSEEEVST HIESCLSSSV ENAQVVGELQ DDGTQMESRN ELAGRIGAFL 180 SGRPSEGSVE VVLKLFRNIV QEPQNAKFRR IRMGNPKIKE AIGDVVGGVE LMEYVGFALQ 240 AEGEEMWAVM EAPLEQQIFL IKEAISLLET RKTEDLPCAN STEGDSSVDS KKVDRQVRVF 300 FSVPESIAAK INLPDSFYNL TAEELRKEAD LRKKKIAESQ LLIPKSYKEK QAKAARKRYK 360 KTVIRIQFPD EVVLQGIFLP WEPTTALYEF ASAALKEPTL EFELLHPVAI KRRVIPRFPE 420 AGGRTPILDD EDLVPSALIK FKPIETDSVV FTGLCNELLE ISEPLRADTA ITPA

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MDDVKDKFKG FMKKVNNQFS SSSSDKFKGQ GRVLGSSSSG PANPILTRPS QNGDLRQNLP  60
PSNIKQRPSI PNTNGNSDGR LKNEPTPQSI PSSDRIPANG FDPFDSLITS GKRSQNGYSL  120
NVVECPVCGQ PYRSEEEVST HIESCLSSSV ENAQVVGELQ DDGTQMESRN ELAGRIGAFL  180
SGRPSEGSVE VVLKLFRNIV QEPQNAKFRR IRMGNPKIKE AIGDVVGGVE LMEYVGFALQ  240
AEGEEMWAVM EAPLEQQIFL IKEAISLLET RKTEDLPCAN STEGDSSVDS KKVDRQVRVF  300
FSVPESIAAK INLPDSFYNL TAEELRKEAD LRKKKIAESQ LLIPKSYKEK QAKAARKRYK  360
KTVIRIQFPD EVVLQGIFLP WEPTTALYEF ASAALKEPTL EFELLHPVAI KRRVIPRFPE  420
AGGRTPILDD EDLVPSALIK FKPIETDSVV FTGLCNELLE ISEPLRADTA ITPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	3e-11	308	441	19	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010271316.1	0.0	PREDICTED: plant UBX domain-containing protein 2
Swissprot	Q9ZU93	1e-178	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A1U8B575	0.0	A0A1U8B575_NELNU; plant UBX domain-containing protein 2
STRING	XP_010271316.1	0.0	(Nelumbo nucifera)

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]