PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016533-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARR-B
Protein Properties Length: 647aa    MW: 69491.4 Da    PI: 5.2792
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016533-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.62.9e-28234287155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  NNU_016533-RA 234 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQKFRL 287
                    79*******************.********************************8 PP
2Response_reg62.52.2e-21381571109
                    EEEESSSHHHHHHHHHHHH...HTTCEEE.......EEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
   Response_reg   1 vlivdDeplvrellrqale...kegyeev.......aeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeee 84 
                    vl+vdD+ + +++l+q+l+    +g ++v       +++  ++ al+ll+ek+  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a g  +
  NNU_016533-RA  38 VLVVDDDTTCLKILEQMLRkclYHGDSIVcsfayafTTCCRATVALNLLREKKgcFDVVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADGRTS 132
                    89*****************77644433441111111566788999999999999***********************6644.8************* PP

                    HHHHHHHTTESEEEESS--HHHHHH CS
   Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                     + + +k Ga d+l Kp+  eel +
  NNU_016533-RA 133 AVMRGIKHGACDYLIKPVRVEELKN 157
                    **********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.8E-3835182No hitNo description
SuperFamilySSF521723.13E-3135172IPR011006CheY-like superfamily
SMARTSM004481.7E-2236159IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011038.03837163IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.6E-1938157IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.64E-2339162No hitNo description
PROSITE profilePS5129411.209231290IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-30231292IPR009057Homeodomain-like
SuperFamilySSF466891.33E-19231291IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-24234287IPR006447Myb domain, plants
PfamPF002499.3E-7236285IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MATVQKLSVS SVSTSGNSHG SCKTDAVVSD QFPAGLRVLV VDDDTTCLKI LEQMLRKCLY  60
HGDSIVCSFA YAFTTCCRAT VALNLLREKK GCFDVVISDV HMPDMDGFKL LEHVGLEMDL  120
PVIMMSADGR TSAVMRGIKH GACDYLIKPV RVEELKNIWQ HVVRKKWNEK KEHEHSGSVE  180
DNDCHKRGAD DAEYTSSVNE GTDGNWKAQK KRRDAKEDEE DGEMENDDPS TSKKPRVVWS  240
VELHQQFVSA VNQLGIDKAV PKRILELMNV PGLTRENVAS HLQKFRLYLK RLSGVAQQQG  300
GIPNSFCGPV ESNAKMGSLG RLDIQALAAS GQIPPQTLAA LHAELLGRPT SNLVLPAIDQ  360
PVLLQASLHG PKCLPVESGV AFDQPLIKCP SNISKQFSQA NISIEDIPSG FGSWATNSVG  420
TTAVSLNQNS SFNSNTVIDY SLLSGQANNV SLGIGQVPDV DIKNINVLNG YAVAGSVSPM  480
VSSCSVHADS SAGWQVQNSA VPFTASSQLP GLVPNRCEIQ GSYGTKTAAL PDPGPSKNLG  540
FVGKGTSIPS RFAVDDLEPP IDNLSHAKTF GDVNGDVVKQ EVNFDYIEHA KSEEEDLLEV  600
DLIVMVAAES QAMADGGGQE DVGLQGEGNK LWNSARGVSI GWAAAGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-23230293164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271366.10.0PREDICTED: two-component response regulator ORR21-like isoform X1
RefseqXP_010271367.10.0PREDICTED: two-component response regulator ORR21-like isoform X1
SwissprotQ8H7S71e-159ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A1U8AXE20.0A0A1U8AXE2_NELNU; two-component response regulator ORR21-like isoform X1
STRINGXP_010271366.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-124response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]