PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_016568-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

BBR-BPC

Protein Properties

Length: 317aa MW: 35063 Da PI: 10.0029

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016568-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	358.1	1.8e-109	14	317	18	301
GAGA_bind 18 aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksid 109 ++l + +q+m++ aerda+i+ern+a+sekk a+aerdmaflqrd+a+aern+a++erdn+++al+++e +++ ++p+g++v +g k+i+ NNU_016568-RA 14 HAL--TVKQQIMAIAAERDAAIQERNMAFSEKKVALAERDMAFLQRDAAIAERNNAIIERDNAIAALEYRESAMNgsgtPTCPPGCEVPRGMKHIH 107 233..3779*************************************************************999988889*********** PP GAGA_bind 110 slqq.lsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak...kkkkksekskkkvkkesader............... 186 + ++ + p+l++ + + r +++ea+pi+ aa e+ + + ++ ++ +ke+ka k k ++ks kk kk ++ + NNU_016568-RA 108 HPKHgYHPPHLGEAPHHSR--NISEAFPISAAAAAPVEAFNFNPHRVKAPTKESKAVlfkKSSKWTTKSSKKGKKGGE--Dlnkhasvavakshdw 199 9955559**999855..556888888888777777777766666666666666221444444444444445444..2447999***** PP GAGA_bind 187 ...skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl 279 +e+k ++l+ln+vs+Dest+P+PvCsCtG+++qCYkWGnGGWqSaCCttt+S+yPLPv++++r+ R++grKmS++af+klL++Laa+G+dl NNU_016568-RA 200 ksgPESEWKGQELGLNQVSFDESTMPPPVCSCTGVQKQCYKWGNGGWQSACCTTTLSMYPLPVMPNKRHVRVGGRKMSGSAFNKLLSRLAAQGHDL 295 999999************************************************************************************** PP GAGA_bind 280 snpvDLkdhWAkHGtnkfvtir 301 s+p+DLkdhWAkHGtn+++ti+ NNU_016568-RA 296 STPIDLKDHWAKHGTNQYITIK 317 *******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.7E-127	1	317	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.0E-93	2	317	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MQWMIPQHQM KEHHALTVKQ QIMAIAAERD AAIQERNMAF SEKKVALAER DMAFLQRDAA 60 IAERNNAIIE RDNAIAALEY RESAMNGSGT PTCPPGCEVP RGMKHIHHPK HGYHPPHLGE 120 APHHSRNISE AFPISAAAAA PVEAFNFNPH RVKAPTKESK AVLFKKSSKW TTKSSKKGKK 180 GGEDLNKHAS VAVAKSHDWK SGPESEWKGQ ELGLNQVSFD ESTMPPPVCS CTGVQKQCYK 240 WGNGGWQSAC CTTTLSMYPL PVMPNKRHVR VGGRKMSGSA FNKLLSRLAA QGHDLSTPID 300 LKDHWAKHGT NQYITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010271439.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
Refseq	XP_010271440.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X2
Swissprot	Q8L999	1e-116	BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBL	A0A1U8AU50	0.0	A0A1U8AU50_NELNU; protein BASIC PENTACYSTEINE6-like isoform X1
TrEMBL	A0A1U8B5I0	0.0	A0A1U8B5I0_NELNU; protein BASIC PENTACYSTEINE6-like isoform X2
STRING	XP_010271438.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	1e-101	basic pentacysteine 6