PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016610-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 1624aa    MW: 175021 Da    PI: 6.3799
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016610-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.3e-0716001623225
                     -S---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH    2 ktelCrffartGtCkyGdrCkFaH 25  
                     +++ C++f+++G+Ck G++C + H
  NNU_016610-RA 1600 GQRVCKYFHENGQCKKGASCDYLH 1623
                     5789*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM001511.0E-4206294IPR019835SWIB domain
SuperFamilySSF475927.85E-21213290IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.108.2E-26214294IPR003121SWIB/MDM2 domain
PfamPF022011.5E-15216289IPR003121SWIB/MDM2 domain
SMARTSM007197.4E-49350460IPR004343Plus-3 domain
PROSITE profilePS5136025.138350495IPR004343Plus-3 domain
SuperFamilySSF1590429.68E-31351469IPR004343Plus-3 domain
PfamPF031262.0E-23355458IPR004343Plus-3 domain
SuperFamilySSF552778.37E-19721779IPR003169GYF domain
PROSITE profilePS5082916.562726780IPR003169GYF domain
CDDcd000722.25E-16726781No hitNo description
SMARTSM004441.6E-20727782IPR003169GYF domain
Gene3DG3DSA:3.30.1490.402.3E-19727780IPR003169GYF domain
PfamPF022135.3E-15728772IPR003169GYF domain
PROSITE profilePS5010314.16415981624IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-416011623IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-516021623IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042393Molecular Functionhistone binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1624 aa     Download sequence    Send to blast
MEEAGDSLNF LAMDYNDHIV LEASYMLGNK GFCATCRSLV MLIENGAQAN PEMLANGADL  60
LQGYNWIGFR SDLATTKSDL IAISNKQLQL RAEPEKPGPA NVDFDDKSNW EYLFKDYWMD  120
LKQKLSLALE ELTQARNLSK GSGDTQKDES SDELYDAKDD KGSNSDSSSG HAEEENSKRR  180
KARKRSKTTK IGDSPGVAEA AGGDEIFMPD NIEWASKELL EFVSHMRNGD KSVLSQFDVQ  240
ALLLEYIKKN KLRDPRRKSQ IICDLRLENL FGKPRVGHFE MLKLLESHFL IKDDPQADDI  300
QGEAVNTDAS PLDVDGNNDI VTKASKDKKR KTRKKGDEKG PQTNLDDYAA IDVHNVNLIY  360
LRRSLMEDLL DDTAKFHDKV IGSFVKIRIS GNNQKQDMYR LVQVIGTCKA AESYKTGKKE  420
TNVMLEILNL NKTEIISIDT ISNQEFSEDE CKRLRQSIKC GLINRLTVYG MWTTDQRKSQ  480
GEVQEKAMAL QAVRVNDCLE SEKLRLSHLR DRANRSIFRF GQSYKIYADF ELLLFKLVRY  540
LFGMVESVTL LNTPEELSRR LQEIPEVHAD PNMDPSYESE EDEGEPDDKN RDNFVRPRDD  600
GFSRKGRERE PISPGKGGSA TYDGWSGARK SFSSWESSKN VSMRSLLDKG DGAIGSSERT  660
HASTWNQGRD TSDSSSWEKP KNQTVVTGLD TGGWNTQGAV RSSIPSSGSA PLSAGTALST  720
NINETEKMWH YQDPSGKVQG PFSMVQLRKW STTGYFPADL RIWRSTEKQE DSILLTDALN  780
GKFLKDSLRV GNSFSQPQKV IPASDNRESS WNGGWRGNNG TSDKVDGWGS RSSGWIATAP  840
EVVNHNETQT GVTSRGWSSS RSTNAWSVQP QVHNQHPSPS FSGKPYRMPS HQGREGQGGE  900
RWNSGQNRGT WNPNKSTGFQ SSSGHGYEKR SSNWGSSGQP SAESWRSQSG SSSLKGWSSP  960
SSGEAHKVAR EGWGSDQGSK TDSTKLLTPT PGGNIVQHSV SEPLRTASGW GEQPHISLTS  1020
YAGSRDSGAA SVLKPSDTSD KVSRIDFSNP PTPTPKSGSG GWAGSQGVEN KLATAPTATA  1080
QETNSWGNAS NPSSDVMQQS VSSSNEPIKI NADLGNQMYN PAKPPAELDS GSESGKLAYS  1140
STVPVSTKPA ADGIDGSDVS QTSISGSNGF DSLANQAVFG LPHQNDSVAF SAGSVSKGGE  1200
DLIQGPKNDC SLHDIVIPSS SANNNQIPLQ LTCDDKQHGV ARALDQKEKF GCDSSPSAHV  1260
DKESRPSDVS VQQDPVVKCH PGTLMLGADT VSNESSPSQA AVSSVPGLAS SVNGNNPPDG  1320
SHGTAHGSIQ GLEMVVSSPI TQFQSHGPGD APALKQELPT SSPVPATGQK SEAATAGQWG  1380
DGQSSGNYSA VTLGAADHTR SYCNPGVSVP NSSSNFIGPA GIEGSNWSTP LTAPPTKTSN  1440
WGVGAGATQG STQNNYVAPS DPRKPLMPGN QWEMGSNIQP PAASTAVWGA GSSENPASAW  1500
GPTQGNANMG WGGSNQGNSN TGWGSGQGAT MQGNTNVGWG APAGNPGMWA SQQKHNGERF  1560
SGHGDRGSHG GDSGHGGGRP SWNRQLSFGS GGSPRPPPRG QRVCKYFHEN GQCKKGASCD  1620
YLHT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271490.10.0PREDICTED: zinc finger CCCH domain-containing protein 19
TrEMBLA0A1U8AUA40.0A0A1U8AUA4_NELNU; zinc finger CCCH domain-containing protein 19
STRINGXP_010271490.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.11e-179nucleic acid binding;zinc ion binding;DNA binding