PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016667-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 360aa    MW: 39745.8 Da    PI: 8.2394
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016667-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-12169216355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  NNU_016667-RA 169 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 216
                    5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.65166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-17168232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16170232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10170216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.46E-13171220No hitNo description
SMARTSM003534.4E-14172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEDPAFIHEC QMDSFDGFST QQIAATLGQD FQHSFSSESF SSYPTFKTRS NTATPTTAFS  60
GSSMDASHTG VERPAKQIKT NSWNSCTTEN ISSTPEASSS PNILSFGNPN LPINQAQQLY  120
GNLMGNMDEA VSSANMIFPS YVTQNYVFKP GHGTKRMNSA TTKPPSHTQD HIIAERKRRE  180
KLSQRFIALS AIVPGLKKMD KASVLGDAIK YLKQLQERVK ILEEQTVKKR VESVVLVKRS  240
QISADDDNSS SDENNLGGGR SDDEAALPEI EARVSDKDVL IRVHSEKQKG VVAKALAEIE  300
KLHLTVVNSS VIPFGKSALN ITIVAVMEPE FSMKVKDLVR HLNSAFRQFI RLVDRVYVGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-14170219857Transcription factor MYC2
5gnj_B5e-14170219857Transcription factor MYC2
5gnj_E5e-14170219857Transcription factor MYC2
5gnj_F5e-14170219857Transcription factor MYC2
5gnj_G5e-14170219857Transcription factor MYC2
5gnj_I5e-14170219857Transcription factor MYC2
5gnj_M5e-14170219857Transcription factor MYC2
5gnj_N5e-14170219857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179ERKRRE
2175180RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271548.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_019055013.10.0PREDICTED: transcription factor bHLH18-like
SwissprotQ9T0729e-64BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A1U8Q8A60.0A0A1U8Q8A6_NELNU; transcription factor bHLH18-like
STRINGXP_010271548.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-62bHLH family protein