PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_016725-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

GRAS

Protein Properties

Length: 441aa MW: 48806.3 Da PI: 9.1475

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016725-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	25.3	1.8e-08	385	428	12	55
GRAS 12 vssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 +++g++++++++L++l++ ++ +gdp qRl+ay++ AL +r++ NNU_016725-RA 385 FAEGNTNATTTTLSHLNQVSNVQGDPEQRLTAYMVSALWSRMNP 428 6789*************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00892	2.3E-11	30	160	IPR000620	EamA domain
SuperFamily	SSF103481	3.79E-8	56	163	No hit	No description
Pfam	PF00892	7.5E-11	191	328	IPR000620	EamA domain
SuperFamily	SSF103481	1.83E-8	235	332	No hit	No description
Pfam	PF03514	6.2E-6	385	428	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MKQTKGNMRS RSRRLWDAIP FAGMMMVECS SVGLITLSKA SMLRGMSNFI FVMYSYALAT 60 LLLLPSAFFC RRATLPPITV SLLCRLFLLG LIGYLVQVFA YTGINYSSPT LASAMSNLIP 120 AFTFILAIIF RMEKLDLRSS NSQAKSLGTL VSIAGAFVVT LYKGPSILTT PSPSDSPHLH 180 LFLPNSNWVI GGLFVAADCL LSALWYIFQA SIVKEYPQEF TLIFFYSFFA TIQSAIVCLL 240 VEREPSKWRL RLDLELFTIV YSAVFGFGFS VGVQTWCLRK KGPFFVAMFR PLGIVIAVVL 300 GIIFLGDILH IGSVIGSVII ALGFYAVMWG KAQEDKLVDE PDSHDKSASR TREGDTALVV 360 TSTEWSETLE ASLTFNLFVV LVFRFAEGNT NATTTTLSHL NQVSNVQGDP EQRLTAYMVS 420 ALWSRMNPTK NPPRSCSVMS T

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MKQTKGNMRS RSRRLWDAIP FAGMMMVECS SVGLITLSKA SMLRGMSNFI FVMYSYALAT  60
LLLLPSAFFC RRATLPPITV SLLCRLFLLG LIGYLVQVFA YTGINYSSPT LASAMSNLIP  120
AFTFILAIIF RMEKLDLRSS NSQAKSLGTL VSIAGAFVVT LYKGPSILTT PSPSDSPHLH  180
LFLPNSNWVI GGLFVAADCL LSALWYIFQA SIVKEYPQEF TLIFFYSFFA TIQSAIVCLL  240
VEREPSKWRL RLDLELFTIV YSAVFGFGFS VGVQTWCLRK KGPFFVAMFR PLGIVIAVVL  300
GIIFLGDILH IGSVIGSVII ALGFYAVMWG KAQEDKLVDE PDSHDKSASR TREGDTALVV  360
TSTEWSETLE ASLTFNLFVV LVFRFAEGNT NATTTTLSHL NQVSNVQGDP EQRLTAYMVS  420
ALWSRMNPTK NPPRSCSVMS T

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019055077.1	0.0	PREDICTED: WAT1-related protein At5g40240-like isoform X1
Swissprot	Q9FL08	1e-110	WTR42_ARATH; WAT1-related protein At5g40240
TrEMBL	A0A1U8Q905	0.0	A0A1U8Q905_NELNU; WAT1-related protein
STRING	XP_010271999.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	1e-06	SCARECROW-like 1