PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_016843-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

LBD

Protein Properties

Length: 296aa MW: 33010.8 Da PI: 6.8924

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016843-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129.3	1.7e-40	10	109	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCaaCk++rrkC++dC+lapyfp +qpk f+n+h+lFG+sn+lk+lk+l+++++ +am+s++y+A++r r Pv+G++g+i +lq+q++q+++el + NNU_016843-RA 10 ACAACKYQRRKCSQDCPLAPYFPPDQPKMFQNAHRLFGVSNILKILKQLNTSQKMEAMRSIIYQANIRDRFPVHGCCGIICHLQHQIQQAEQELGA 105 7*********************************************************************************************99 PP DUF260 97 lkee 100 ++++ NNU_016843-RA 106 VNAQ 109 9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.161	9	110	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-39	10	106	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009556	Biological Process	microsporogenesis
GO:0009786	Biological Process	regulation of asymmetric cell division
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MTVKGGTSQA CAACKYQRRK CSQDCPLAPY FPPDQPKMFQ NAHRLFGVSN ILKILKQLNT 60 SQKMEAMRSI IYQANIRDRF PVHGCCGIIC HLQHQIQQAE QELGAVNAQL AIYRQHHHQI 120 AASSPPHHSP SSQLQLGMPS PNNALPLFQH HPHQPYNSVA TGISLAPHHS FSNGGNAAYN 180 TPVYIDPKDN IVNPLWVQHP YNNNNNNNNN PMALQSQLLV SHQIPIHQEA TEAPQDYDEI 240 PPFFDTIDDR QSYIDSKEAY DSSSDSSLKD TTQSIEHVSE NELKSAAACF SLTSVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-28	6	113	7	114	LOB family transfactor Ramosa2.1
5ly0_B	3e-28	6	113	7	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010272196.1	0.0	PREDICTED: LOB domain-containing protein 27-like isoform X2
TrEMBL	A0A1U8AW16	0.0	A0A1U8AW16_NELNU; LOB domain-containing protein 27-like isoform X2
STRING	XP_010272195.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-52	LOB domain-containing protein 27