PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_017077-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family G2-like
Protein Properties Length: 198aa    MW: 21411.2 Da    PI: 6.2388
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_017077-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like97.78.2e-3185138155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  NNU_017077-RA  85 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 138
                    59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.05982141IPR017930Myb domain
SuperFamilySSF466891.34E-2082142IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-3184143IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-2486138IPR006447Myb domain, plants
PfamPF002495.7E-888137IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MREEDSNWFS RWEEELPSPE ELMPLSQTLI TPDLALAFDI RNPNPSSQPP PPPPPPPSQP  60
HSAEFDSGEL GSGAAGDEPA RTLKRPRLVW TPQLHKRFVD AVAHLGIKNA VPKTIMQLMS  120
VDGLTRENVA SHLQKYRLYL KRMQGLSGGG GGGGGAAALS ATDPATDHLF ASAPANSQPL  180
IDKNPFHSQL ISGCRLEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A5e-3485141157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271925.11e-122PREDICTED: transcription factor PCL1-like
RefseqXP_010271926.11e-122PREDICTED: transcription factor PCL1-like
SwissprotO222107e-60MYBC1_ARATH; Transcription factor MYBC1
TrEMBLA0A1U8AVC61e-121A0A1U8AVC6_NELNU; transcription factor PCL1-like
STRINGXP_010271925.11e-122(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.16e-64G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]