PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_017150-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 242aa    MW: 25672.2 Da    PI: 7.4719
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_017150-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-202877255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                   +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g
  NNU_017150-RA 28 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 77
                   69*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-322885IPR001471AP2/ERF domain
CDDcd000181.90E-182885No hitNo description
SMARTSM003801.1E-402891IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-222886IPR016177DNA-binding domain
PROSITE profilePS5103223.9332885IPR001471AP2/ERF domain
PfamPF008473.8E-142877IPR001471AP2/ERF domain
PRINTSPR003675.0E-112940IPR001471AP2/ERF domain
PRINTSPR003675.0E-115167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MAPRDKPNGN GGGKGGNAGC NSNGKEVHFR GVRKRPWGRY AAEIRDPGKK SRVWLGTFDT  60
AEEAARAYDA AAREFRGSKA KTNFPLPSES NNNQSPSQSS TVESSSREGF SPAPVAAPSS  120
LEIDLLHRGA GGGGVGGGTA GFAVRFPFHH QHHVSPTAAA GVLPTAHPFF FFDAIVRSEN  180
MTHHHPLRFD PAAAEYQAAF AGGGVQSDSD SSSVVDFNHH DELIPRRGVL ELDLNLPPPE  240
VA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-222890568ATERF1
3gcc_A8e-222890568ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272364.11e-177PREDICTED: ethylene-responsive transcription factor 4-like
SwissprotQ9LW496e-56ERF4_NICSY; Ethylene-responsive transcription factor 4
TrEMBLA0A1U8AW221e-175A0A1U8AW22_NELNU; ethylene-responsive transcription factor 4-like
STRINGXP_010272364.11e-176(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-25erf domain protein 9