PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_017152-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 157aa    MW: 17037.3 Da    PI: 8.853
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_017152-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.4e-20757256
            AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                   +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  NNU_017152-RA  7 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 57
                   69*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.1E-34770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-32764IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-22765IPR016177DNA-binding domain
CDDcd000189.77E-30765No hitNo description
PROSITE profilePS5103222.721764IPR001471AP2/ERF domain
PfamPF008472.5E-13756IPR001471AP2/ERF domain
PRINTSPR003674.3E-11819IPR001471AP2/ERF domain
PRINTSPR003674.3E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MASREGHYRG VRKRPWGRYA AEIRDPWKKT RVWLGTFDTP EEAALAYDGA ARSLRGAKAK  60
TNFPAPATAL SFDLNVPSDR WACPPGGFVF GEYLQTRVLK EVSSGDGPPV RDICASGETS  120
AAELTPAPQS FFGIARRGLS IDLNEPPPST TSPLCLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21764563ATERF1
3gcc_A1e-21764563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272367.11e-112PREDICTED: ethylene-responsive transcription factor 12-like
SwissprotQ94ID68e-39ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A1U8B8N11e-110A0A1U8B8N1_NELNU; ethylene-responsive transcription factor 12-like
STRINGXP_010272367.11e-111(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.13e-41ERF domain protein 12