PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_017159-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 819aa MW: 90056.1 Da PI: 6.6034

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_017159-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.6	7.8e-07	202	220	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+ffar G+C G+ C+F H NNU_017159-RA 202 CDFFAR-GWCIKGSACRFLH 220 ****.*********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.732	196	223	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	4.58E-6	196	221	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-4	201	220	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010220	Biological Process	positive regulation of vernalization response
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence Send to blast
MQWPATTVED LELRPEDRDK EERGNQVIKT GSITTTSVRV DSTEEVKLDG NDDDLRSGST 60 TPRNSKQNLS TDIHDIKESA VDKKVGILEE KKGGTDVQKD FSEANKAIEA DLNDNDSNGS 120 STRTLSANGK EIAAETLMES GFGVKEANDV VYSKEDAEQM DIPEGHDLNL KASSLPIALT 180 RPRSLSPGVE VEEQNKRPAI VCDFFARGWC IKGSACRFLH KKDGVGNTSE GAKVDPQTSN 240 WKSELQVDAA LGQSFGKSRL STFADPSASS VGSNPLKSTF PSETVLHWKH GEGQGHQFHD 300 EHRLSSLPRG DLSSGLTYNE SGSTSVVRRD LQRFPLVRDD SKFVPSFQDE GRGNLRQNYL 360 LDDHNRHTSI LIQGDVPKFG TSGRSWAPNH CETQQTSSVL EEFNQKSLSG LRDGKTSVTE 420 ELARGSPLAR SSLVPEYRYF SSGSIYRSSS YPFAYDRNME EAAGLKQQSI SPSSHTFSWS 480 GASSSHVSST FGIDPLAGQK HLDSDKGYHP SRSASLPRSS SSPFNSKLEA ENLLHSVPRD 540 PPISGYKSQF SSNDWEPSVP FRPSFHFSQT SISSPGSQYD PLLDSIEPPS GANRSFQAAY 600 FGRGSATQSS ENQLTNGDPS LIRTNIPEYN THGVLEKDSY NYGTGLHIAA KENVGAVADE 660 HNRSTMPKEE KPFGSGHSVD VANLDKMSHD GGFTHQSDGS KLKKELRTDG GQKIEVDLHR 720 NSKHQVDEAR PHKESKALKL FRTDLVDFVK ELVKPSWRGG HLSKDAHKTI VKKAVDKVLS 780 TLQPHQIPNT TESINQYLSS SRPKITKLVE AYVEKYGKT

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence Send to blast

MQWPATTVED LELRPEDRDK EERGNQVIKT GSITTTSVRV DSTEEVKLDG NDDDLRSGST  60
TPRNSKQNLS TDIHDIKESA VDKKVGILEE KKGGTDVQKD FSEANKAIEA DLNDNDSNGS  120
STRTLSANGK EIAAETLMES GFGVKEANDV VYSKEDAEQM DIPEGHDLNL KASSLPIALT  180
RPRSLSPGVE VEEQNKRPAI VCDFFARGWC IKGSACRFLH KKDGVGNTSE GAKVDPQTSN  240
WKSELQVDAA LGQSFGKSRL STFADPSASS VGSNPLKSTF PSETVLHWKH GEGQGHQFHD  300
EHRLSSLPRG DLSSGLTYNE SGSTSVVRRD LQRFPLVRDD SKFVPSFQDE GRGNLRQNYL  360
LDDHNRHTSI LIQGDVPKFG TSGRSWAPNH CETQQTSSVL EEFNQKSLSG LRDGKTSVTE  420
ELARGSPLAR SSLVPEYRYF SSGSIYRSSS YPFAYDRNME EAAGLKQQSI SPSSHTFSWS  480
GASSSHVSST FGIDPLAGQK HLDSDKGYHP SRSASLPRSS SSPFNSKLEA ENLLHSVPRD  540
PPISGYKSQF SSNDWEPSVP FRPSFHFSQT SISSPGSQYD PLLDSIEPPS GANRSFQAAY  600
FGRGSATQSS ENQLTNGDPS LIRTNIPEYN THGVLEKDSY NYGTGLHIAA KENVGAVADE  660
HNRSTMPKEE KPFGSGHSVD VANLDKMSHD GGFTHQSDGS KLKKELRTDG GQKIEVDLHR  720
NSKHQVDEAR PHKESKALKL FRTDLVDFVK ELVKPSWRGG HLSKDAHKTI VKKAVDKVLS  780
TLQPHQIPNT TESINQYLSS SRPKITKLVE AYVEKYGKT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010272379.1	0.0	PREDICTED: protein FRIGIDA-ESSENTIAL 1 isoform X2
TrEMBL	A0A1U8AWH1	0.0	A0A1U8AWH1_NELNU; protein FRIGIDA-ESSENTIAL 1 isoform X2
STRING	XP_010272377.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	9e-32	C3H family protein