PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_017169-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

SBP

Protein Properties

Length: 187aa MW: 21121.7 Da PI: 9.4439

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_017169-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	136.8	6.6e-43	64	141	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+e+C+adlseak+yhrrhkvCe+hskapvvlv+gl+qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk+++ NNU_017169-RA 64 CCQAEKCTADLSEAKRYHRRHKVCEQHSKAPVVLVAGLKQRFCQQCSRFHELSEFDETKRSCRRRLAGHNERRRKNST 141 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.4E-36	57	126	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.676	62	139	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	7.95E-40	62	143	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	7.5E-33	65	138	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
METIRQGGSQ GLMKEKGKRE VVVEDVDEEE EEIGGFEDDK KKRTIVSPAC RRGSSGGGGV 60 SPPCCQAEKC TADLSEAKRY HRRHKVCEQH SKAPVVLVAG LKQRFCQQCS RFHELSEFDE 120 TKRSCRRRLA GHNERRRKNS TESHGEGSSR KGVATQLKEN HCRQADQSGR MQIPHTGSAN 180 YKHFQIR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-38	53	138	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010272389.1	1e-135	PREDICTED: squamosa promoter-binding protein 1-like
Swissprot	Q38740	6e-45	SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBL	A0A1U8AWI1	1e-134	A0A1U8AWI1_NELNU; squamosa promoter-binding protein 1-like
STRING	XP_010272389.1	1e-135	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	8e-45	squamosa promoter binding protein-like 5

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]