PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_017177-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 514aa    MW: 57835.2 Da    PI: 8.4728
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_017177-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.62e-17404495289
                    EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    +k+l++sdv+++gr++lpkk  e++   +  +e++++t++d  s+++W +++++  ++ks++yvl+ ++ +Fvk++ Lk+gD+++++ d++++
  NNU_017177-RA 404 QKELKNSDVNSLGRIILPKKDSEANlpTLTVKEGFQITVRDlASSKVWHMRYRFwpNNKSRMYVLE-NTGDFVKQKSLKTGDSIMLYQDESNQ 495
                    799************************66666899******7788*******9989999999**99.********************444343 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-24398496IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.05E-19402497IPR015300DNA-binding pseudobarrel domain
CDDcd100174.72E-21402494No hitNo description
SMARTSM010199.3E-17403506IPR003340B3 DNA binding domain
PROSITE profilePS508639.474403504IPR003340B3 DNA binding domain
PfamPF023622.0E-14404495IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MSVWSLWTWC SVQADVVRSS LPHLNQSTEA PSFDPPPSHW SDEYPDTTTH RTSVNQPTPV  60
STPSLSSQPL YCHGLSHRPF AFLDAFLSSF THLCFIHWPS FFFHHHDHHH SLWLFFTCNT  120
SSPPIDQNPE PVLLPSCVSP LVMENTIPRP VTTTPTTFPV TSPPTTTVAT TLSQEQKLRN  180
IEYGKELQLG FSPLPLPPAS VSPLPPTTVP TPNHPFSTPE SRSTVPYSQD HHHQHHNLSE  240
SQYYSYVFSP DYASSSSIFP VFPLMVDPSV IDNGLPSSMV GGLLDGYYPT EKFIDKVGLE  300
NSCFLESMAQ SQVQQKRLWG SITKAARSKR RIARRMNSIS SPRVGPPNQN SSSSSSPGSP  360
SSNKNLSFSA DAAQSNSNCD TDRKKRELFT FTKPHNRKLR LLLQKELKNS DVNSLGRIIL  420
PKKDSEANLP TLTVKEGFQI TVRDLASSKV WHMRYRFWPN NKSRMYVLEN TGDFVKQKSL  480
KTGDSIMLYQ DESNQFVSNL ILLTTVFFRL AELL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A8e-393964966106B3 domain-containing transcription factor LEC2
6j9c_D8e-393964966106B3 domain-containing transcription factor LEC2
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272400.10.0PREDICTED: B3 domain-containing protein IDEF1
TrEMBLA0A1U8AWJ00.0A0A1U8AWJ0_NELNU; B3 domain-containing protein IDEF1
STRINGXP_010272400.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.12e-30B3 family protein