PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_017261-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 67aa MW: 7752.12 Da PI: 12.1757

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_017261-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	94.9	6.1e-30	18	67	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtpeLH+rFv+av++LGG++kAtPk+il+lm+vkgL ++hvkSHLQ NNU_017261-RA 18 PRLRWTPELHQRFVSAVDHLGGKHKATPKRILQLMSVKGLMISHVKSHLQ 67 8************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.023	14	67	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.0E-27	15	67	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.5E-23	18	67	IPR006447	Myb domain, plants
SuperFamily	SSF46689	9.32E-14	18	67	IPR009057	Homeodomain-like
Pfam	PF00249	9.1E-9	19	67	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 67 aa Download sequence Send to blast
MRSSQRIGVR HYSKSDVPRL RWTPELHQRF VSAVDHLGGK HKATPKRILQ LMSVKGLMIS 60 HVKSHLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-18	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-18	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-18	19	67	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-18	19	67	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-18	19	67	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-18	19	67	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-18	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-18	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-18	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-18	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-18	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-18	19	67	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010272283.1	2e-41	PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
Refseq	XP_010272284.1	2e-41	PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
Refseq	XP_010272285.1	2e-41	PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
Swissprot	Q700D9	1e-23	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A1U8AVV3	5e-40	A0A1U8AVV3_NELNU; putative Myb family transcription factor At1g14600 isoform X1
TrEMBL	A0A1U8AW93	5e-40	A0A1U8AW93_NELNU; putative Myb family transcription factor At1g14600 isoform X2
STRING	XP_010272283.1	9e-41	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	4e-26	G2-like family protein