PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_017393-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

M-type_MADS

Protein Properties

Length: 171aa MW: 19537.3 Da PI: 9.5835

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_017393-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.2	8e-32	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+ NNU_017393-RA 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 58 79***********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.1E-42	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	33.992	1	61	IPR002100	Transcription factor, MADS-box
CDD	cd00265	3.24E-41	2	60	No hit	No description
SuperFamily	SSF55455	1.83E-30	2	72	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-33	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.8E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-33	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.0E-33	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYANN 60 RWVSLKSQQD SKPKWVLSTD VHKCSPANQN TDRESGIMIS ILGFPPLFPQ LKFHFQIETF 120 FWVSPFTPSH FLDKASATAE AKRCIADSSA HTQRDLRLSA LREGDEHMTD A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	1e-21	1	73	1	75	Myocyte-specific enhancer factor 2B
1tqe_Q	1e-21	1	73	1	75	Myocyte-specific enhancer factor 2B
1tqe_R	1e-21	1	73	1	75	Myocyte-specific enhancer factor 2B
1tqe_S	1e-21	1	73	1	75	Myocyte-specific enhancer factor 2B
6c9l_A	1e-21	1	73	1	75	Myocyte-specific enhancer factor 2B
6c9l_B	1e-21	1	73	1	75	Myocyte-specific enhancer factor 2B
6c9l_C	1e-21	1	73	1	75	Myocyte-specific enhancer factor 2B
6c9l_D	1e-21	1	73	1	75	Myocyte-specific enhancer factor 2B
6c9l_E	1e-21	1	73	1	75	Myocyte-specific enhancer factor 2B
6c9l_F	1e-21	1	73	1	75	Myocyte-specific enhancer factor 2B

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1S5YCW3	1e-36	A0A1S5YCW3_ELAGV; Shell-specific protein 2 (Fragment)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58780.2	8e-39	MIKC_MADS family protein