PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_017405-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family DBB
Protein Properties Length: 336aa    MW: 36288.9 Da    PI: 4.9485
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_017405-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.5e-06447542
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                    C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  NNU_017405-RA  4 QCNACEAAEASVLCCADDAALCWACDEKVHAAnklaskHQRVPL 47
                   7******99*********************66899999999986 PP
2zf-B_box30.38.4e-105294137
       zf-B_box  1 seerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                   s+++kC+ ++e    +fC +++ llC++C +++H        H
  NNU_017405-RA 52 SQMPKCDICQETVGYFFCLEDRALLCRKCDVAIHTAnnyvsgH 94
                   689*********9*********************544455556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.893147IPR000315B-box-type zinc finger
CDDcd000215.60E-9347No hitNo description
SMARTSM003362.0E-10447IPR000315B-box-type zinc finger
SuperFamilySSF578458.24E-54692No hitNo description
PROSITE profilePS501199.3435299IPR000315B-box-type zinc finger
SMARTSM003365.1E-175299IPR000315B-box-type zinc finger
PfamPF006431.7E-75395IPR000315B-box-type zinc finger
CDDcd000213.04E-95599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MKIQCNACEA AEASVLCCAD DAALCWACDE KVHAANKLAS KHQRVPLSNS SSQMPKCDIC  60
QETVGYFFCL EDRALLCRKC DVAIHTANNY VSGHQRFLLT GVKVGLESEE PVASSTKEKL  120
NPAGRDVGVV SRNPGTECRP EPMSAGVVPR NERIISRLEP SSAGMVSRNI GTISRPEPRR  180
HISPQMAGEN SGSLSSLVCG VGSLPTSTMS FSGGPMSGSS PQWPLDEFFG FTELSQNYGF  240
MDHTSSKADS GRQEDSDWSP ILRAADEELD VDECLGQVPE MSWMVPQMPS PPTASGLNWP  300
KNLRNPPSDC AASVPDICSL SVQNLYQYQP NAAILK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272710.10.0PREDICTED: B-box zinc finger protein 22
TrEMBLA0A1U8B9H80.0A0A1U8B9H8_NELNU; B-box zinc finger protein 22
STRINGXP_010272710.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.19e-67light-regulated zinc finger protein 1