PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_017467-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 326aa    MW: 36139.8 Da    PI: 5.4944
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_017467-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13122173155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  NNU_017467-RA 122 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 173
                    79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.29E-13120177No hitNo description
PROSITE profilePS5088815.459121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-17121188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-13122186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MALEAVVFPQ DLFSYGCKDL YSLGGGIGGW SYDFAVEEDN KCGIEMLEKK MEQGLGGNWD  60
SSSSSMVQNI KEWEANSSPE ACTGDAFFPG GFPPMDAQAA TAGRRKRRRT KSCKNKEEVE  120
NQRMTHIAVE RNRRKQMNEY LAVLRSLMPP SYVQRGDQAS IIGGAINFVK ELEQLLQSLE  180
AQKRMKQQSD VGFSSPFADF FTFPQYSSCS THCNNPATSA SSATASNEAS AENRSAIADI  240
EVTMVESHAN LKVLSKRRPK QLLKMVAGFQ TLRLTILHLN VTAVDQMVLY SFSVKVEDEC  300
QLTSVDEIAT AVYQMLGRIQ EESTLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104108RKRRR
2104109RKRRRT
3122133RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272971.10.0PREDICTED: transcription factor bHLH96
SwissprotQ9C7T43e-91BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A1U8B9D60.0A0A1U8B9D6_NELNU; transcription factor bHLH96
STRINGXP_010272971.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-83bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]