PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_017478-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 337aa    MW: 37660.6 Da    PI: 4.5036
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_017478-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.4e-1958111356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k++++t +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  NNU_017478-RA  58 KKRRLTVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 111
                    56689************************************************9 PP
2HD-ZIP_I/II129.11.7e-4157149193
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    ekkrrl+ +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy+ Lk++yd+lk++ ++L++e+e+L  el+e
  NNU_017478-RA  57 EKKRRLTVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYSLLKSNYDTLKDNYNALQREKEALLVELAE 149
                    69*************************************************************************************988875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.13E-1948115IPR009057Homeodomain-like
PROSITE profilePS5007117.36253113IPR001356Homeobox domain
SMARTSM003897.1E-1856117IPR001356Homeobox domain
CDDcd000862.65E-1758114No hitNo description
PfamPF000462.0E-1658111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.3E-2060120IPR009057Homeodomain-like
PRINTSPR000319.9E-68493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000319.9E-693109IPR000047Helix-turn-helix motif
PfamPF021833.1E-14113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MKGPSSSDSL GALISICPST EERSSGANNH VYRRDFQSML DGLDEEDCLE ESGPVAEKKR  60
RLTVDQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYS  120
LLKSNYDTLK DNYNALQREK EALLVELAEL KSKLGGENTE SNVSVKEEVM VSESDMVATV  180
QSKIPAAAVV GGSEATEPNQ ESYNTSNTNN ANNEVGASIF PDFKDGSSDS DSSAILNEDN  240
SPNAAISSPG LFQQHQLLIS PASSSLRFNY TTSSSPSTMN CFQFSDLRTI PTCPQKAYQH  300
PLMKMEEHNF FGAEEPCNFF SEDQAPTLQW YCPDQWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272979.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A1U8AXJ40.0A0A1U8AXJ4_NELNU; homeobox-leucine zipper protein ATHB-6-like
STRINGXP_010272979.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.15e-50homeobox protein 6