PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_017543-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 189aa    MW: 21159.7 Da    PI: 10.214
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_017543-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.41.1e-103381148
                     HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +++ ++  lG++ W+ Ia+ ++  +t++++k++w+++l
    NNU_017543-RA  3 RILTLHSILGNK-WSEIAKQFP-SLTDNEIKNFWNTHL 38
                     88999*******.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.112142IPR017930Myb domain
CDDcd001671.21E-6238No hitNo description
Gene3DG3DSA:1.10.10.602.4E-14239IPR009057Homeodomain-like
PfamPF002491.1E-8338IPR001005SANT/Myb domain
SuperFamilySSF466896.61E-9348IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MNRILTLHSI LGNKWSEIAK QFPSLTDNEI KNFWNTHLKK KLIKMGIHPI THQPQTNFFM  60
DQPHLLHRAK LLHQKLMSWY FQCLLQTAAL LKTNSSIGSM NSLVLNSVLK ENPVLSSSQL  120
DDLIRFSVGT ASQALPSSIL SSRLPADMQL PPLKDVMDLG ERSHQSPCIH LPSPLSSLPP  180
ASPVTNTII
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301053.12e-30transcription factor MYB93
TrEMBLA0A2N9F9B07e-31A0A2N9F9B0_FAGSY; Uncharacterized protein
STRINGXP_010274078.15e-92(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.19e-25myb domain protein 93