PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_017704-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 315aa    MW: 35848.8 Da    PI: 8.7149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_017704-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.6e-14113164155
                    CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  NNU_017704-RA 113 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YIQRGDQASIVGGAIEFVKELE 164
                    79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.2E-14111167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-12111168No hitNo description
SuperFamilySSF474596.02E-17111181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.307112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-11113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-10118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MALEALSSND LSNFITYDAL CSAQHYSHAP PLDTSSVDDK IISDGVNKSL HFGRFRPPEL  60
HPTSEESSPM IRRNLLALET ADGRPNSATT TQGRKKRRRR PKVCKNKEEA ETQRMTHIAV  120
ERNRRKQMNE HLAVLRSLMP ESYIQRGDQA SIVGGAIEFV KELEQLLQFL EVQKRLLQQK  180
GPLKSSSSNN SINFFPPPFS QFFTYPQYSW CQAPREYPQE NRSSVADIEV TLIETHANLR  240
VLTQRRPRQL LKMVLGFQTL RLTILHLNVS TLDSFVLYSF SVKVEEGCHL TSVDDIASAV  300
HHMLRMINDE AALAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19399RKKRRRR
29499KKRRRR
3113124RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273153.10.0PREDICTED: transcription factor bHLH94-like
SwissprotQ9SK913e-72BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A1U8AXY40.0A0A1U8AXY4_NELNU; transcription factor bHLH94-like
STRINGXP_010273153.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-58bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]